Variant report

Variant	rs11563986
Chromosome Location	chr7:27387399-27387400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11563956	1.00[AMR][1000 genomes]
rs11563990	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs11970777	0.92[ASW][hapmap];0.83[LWK][hapmap]
rs17478503	1.00[EUR][1000 genomes]
rs17502970	0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398484	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420239	1.00[AMR][1000 genomes]
rs58320941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27385600-27387400	Enhancers	Fetal Lung	lung
3	chr7:27386400-27387400	Enhancers	Colon Smooth Muscle	Colon
4	chr7:27386600-27387800	Enhancers	Pancreas	Pancrea
5	chr7:27386800-27387600	Flanking Active TSS	A549	lung
6	chr7:27387200-27390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links