Variant report

Variant	rs17502970
Chromosome Location	chr7:27381200-27381201
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11563956	1.00[AMR][1000 genomes]
rs11563986	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11563990	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs17473844	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs28398484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420239	1.00[AMR][1000 genomes]
rs58320941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27378200-27381800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27379600-27383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:27379800-27381200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:27379800-27381600	Weak transcription	HepG2	liver
5	chr7:27379800-27384400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:27379800-27384400	Weak transcription	A549	lung
7	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:27380000-27384800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:27381000-27381400	Enhancers	Fetal Heart	heart
10	chr7:27381200-27381800	Enhancers	Fetal Intestine Small	intestine
11	chr7:27381200-27383000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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