Variant report

Variant	rs11564394
Chromosome Location	chr18:25670974-25670975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11083244	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs11083247	1.00[YRI][hapmap]
rs11564383	1.00[YRI][hapmap]
rs11564401	1.00[YRI][hapmap]
rs11564420	1.00[YRI][hapmap]
rs17469315	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
3	chr18:25666400-25671000	Enhancers	HepG2	liver
4	chr18:25667400-25671200	Enhancers	Liver	Liver
5	chr18:25667400-25672400	Enhancers	Fetal Heart	heart
6	chr18:25667600-25672200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr18:25668000-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:25668000-25680200	Weak transcription	HSMM	muscle
9	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr18:25668800-25671200	Weak transcription	Osteobl	bone
11	chr18:25668800-25671800	Weak transcription	Brain Substantia Nigra	brain
12	chr18:25668800-25671800	Weak transcription	Right Ventricle	heart
13	chr18:25668800-25672000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:25669000-25674800	Weak transcription	NH-A	brain
15	chr18:25669800-25671600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:25669800-25671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr18:25669800-25672000	Enhancers	Fetal Intestine Small	intestine
18	chr18:25669800-25676000	Weak transcription	Fetal Brain Female	brain
19	chr18:25670000-25675000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr18:25670000-25677000	Weak transcription	Fetal Brain Male	brain
21	chr18:25670200-25671000	Enhancers	Fetal Intestine Large	intestine
22	chr18:25670400-25671800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr18:25670400-25687800	Weak transcription	Brain Germinal Matrix	brain
24	chr18:25670600-25671600	Weak transcription	Ovary	ovary
25	chr18:25670600-25671600	Weak transcription	Pancreas	Pancrea
26	chr18:25670600-25671800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:25670600-25672400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr18:25670600-25690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:25670800-25671000	Enhancers	Brain Angular Gyrus	brain
30	chr18:25670800-25671800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:25670800-25672000	Flanking Active TSS	A549	lung

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