Variant report

Variant	rs11564420
Chromosome Location	chr18:25537909-25537910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11083244	1.00[YRI][hapmap]
rs11083247	1.00[YRI][hapmap]
rs11564383	1.00[YRI][hapmap]
rs11564394	1.00[YRI][hapmap]
rs11564401	1.00[YRI][hapmap]
rs17469315	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25512200-25540000	Weak transcription	Aorta	Aorta
2	chr18:25523000-25540200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:25528400-25539600	Weak transcription	Brain Germinal Matrix	brain
4	chr18:25528600-25542800	Weak transcription	Fetal Heart	heart
5	chr18:25528600-25547600	Weak transcription	HepG2	liver
6	chr18:25528800-25543200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr18:25529200-25540200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:25529200-25540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr18:25529200-25543200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:25530600-25539800	Weak transcription	A549	lung
11	chr18:25530600-25540000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:25530800-25555400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:25531000-25538600	Weak transcription	Ovary	ovary
14	chr18:25531000-25539800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:25531000-25540000	Weak transcription	Brain Angular Gyrus	brain
16	chr18:25531000-25544800	Weak transcription	HUVEC	blood vessel
17	chr18:25531000-25548000	Weak transcription	Right Ventricle	heart
18	chr18:25531200-25593600	Weak transcription	Fetal Kidney	kidney
19	chr18:25532400-25539600	Weak transcription	Dnd41	blood
20	chr18:25532400-25541400	Weak transcription	Brain Substantia Nigra	brain
21	chr18:25532600-25545000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr18:25533600-25543200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr18:25534600-25540200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr18:25534600-25540400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:25534600-25546800	Weak transcription	Fetal Lung	lung
26	chr18:25534800-25540000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:25534800-25540000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:25534800-25542600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr18:25535000-25540000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr18:25535000-25543800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr18:25535000-25544400	Strong transcription	NH-A	brain
32	chr18:25535200-25543600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr18:25535800-25545800	Strong transcription	Liver	Liver
34	chr18:25536400-25578200	Weak transcription	Fetal Brain Male	brain
35	chr18:25536600-25538800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:25536600-25540000	Weak transcription	Brain Anterior Caudate	brain
37	chr18:25536600-25540000	Weak transcription	Brain Hippocampus Middle	brain
38	chr18:25536600-25545400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr18:25536600-25554200	Weak transcription	HSMMtube	muscle
40	chr18:25536800-25538800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr18:25536800-25574200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr18:25537000-25538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr18:25537000-25541800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr18:25537000-25544800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr18:25537400-25538200	Strong transcription	HSMM	muscle
46	chr18:25537400-25539200	Strong transcription	Left Ventricle	heart
47	chr18:25537400-25543800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr18:25537400-25545800	Strong transcription	Osteobl	bone
49	chr18:25537600-25543400	Strong transcription	Fetal Brain Female	brain
50	chr18:25537600-25543600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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