Variant report

Variant	rs11567725
Chromosome Location	chr5:35865962-35865963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11567696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11567758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59469456	1.00[AMR][1000 genomes]
rs73747904	1.00[AMR][1000 genomes]
rs73747905	1.00[AMR][1000 genomes]
rs73747911	1.00[AMR][1000 genomes]
rs73747915	1.00[AMR][1000 genomes]
rs7730065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880591	chr5:35859863-35870588	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv597815	chr5:35864590-35871684	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35857400-35869200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr5:35857800-35866600	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr5:35858800-35866600	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
4	chr5:35860000-35869000	Weak transcription	HMEC	breast
5	chr5:35860000-35876600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:35860400-35872800	Weak transcription	Spleen	Spleen
7	chr5:35860400-35883800	Weak transcription	Small Intestine	intestine
8	chr5:35861200-35870400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:35862400-35870400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:35862600-35868200	Strong transcription	Fetal Thymus	thymus
11	chr5:35862600-35868600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:35862600-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:35863600-35868800	Weak transcription	Lung	lung
14	chr5:35863800-35868400	Weak transcription	HSMM	muscle
15	chr5:35863800-35868800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:35863800-35869000	Weak transcription	GM12878-XiMat	blood
17	chr5:35863800-35876200	Weak transcription	NHDF-Ad	bronchial
18	chr5:35864200-35867800	Weak transcription	NHLF	lung
19	chr5:35864200-35869600	Weak transcription	Primary B cells from cord blood	blood
20	chr5:35864600-35876600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:35864800-35866000	Active TSS	Primary T cells from cord blood	blood
22	chr5:35864800-35866000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:35864800-35867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:35864800-35867600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:35864800-35867600	Weak transcription	Osteobl	bone
26	chr5:35865000-35866000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:35865000-35866400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr5:35865000-35867000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:35865200-35866000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:35865400-35866000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr5:35865600-35866000	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
32	chr5:35865600-35866200	Active TSS	Thymus	Thymus
33	chr5:35865600-35866600	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
34	chr5:35865600-35866800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:35865800-35866200	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
36	chr5:35865800-35866400	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood

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