Variant report

Variant	rs73747911
Chromosome Location	chr5:35718119-35718120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11567696	1.00[AMR][1000 genomes]
rs11567710	1.00[AMR][1000 genomes]
rs11567713	1.00[AMR][1000 genomes]
rs11567721	1.00[AMR][1000 genomes]
rs11567725	1.00[AMR][1000 genomes]
rs11567732	1.00[AMR][1000 genomes]
rs11567746	1.00[AMR][1000 genomes]
rs11567752	1.00[AMR][1000 genomes]
rs11567758	1.00[AMR][1000 genomes]
rs59469456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747905	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:35718000-35718600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links