Variant report

Variant	rs11568345
Chromosome Location	chr2:190437632-190437633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190435230..190437712-chr2:190445888..190447772,2	MCF-7	breast:
2	chr2:190424104..190426651-chr2:190435111..190437728,3	MCF-7	breast:
3	chr2:190437016..190438536-chr2:190439117..190440686,2	MCF-7	breast:
4	chr2:190307972..190310457-chr2:190436965..190439682,2	K562	blood:

Variant related genes	Relation type
ENSG00000138449	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16831701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190424800-190441800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:190424800-190444400	Weak transcription	Brain Substantia Nigra	brain
3	chr2:190426600-190444200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:190428400-190443800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:190429000-190438000	Genic enhancers	Liver	Liver
6	chr2:190429000-190438200	Strong transcription	Dnd41	blood
7	chr2:190429000-190439600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:190429000-190439600	Weak transcription	Lung	lung
9	chr2:190429000-190441600	Weak transcription	Fetal Brain Female	brain
10	chr2:190429000-190442000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:190429000-190444400	Weak transcription	Thymus	Thymus
12	chr2:190429200-190439600	Weak transcription	Colonic Mucosa	Colon
13	chr2:190429400-190439600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr2:190429800-190441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:190430200-190443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:190430400-190439600	Weak transcription	Gastric	stomach
17	chr2:190430400-190444600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:190431000-190439600	Weak transcription	Fetal Brain Male	brain
19	chr2:190431200-190444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:190431600-190441200	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:190431800-190440000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
22	chr2:190432000-190444600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:190432600-190438200	Weak transcription	Aorta	Aorta
24	chr2:190432600-190441200	Weak transcription	Spleen	Spleen
25	chr2:190433600-190439600	Genic enhancers	Adipose Nuclei	Adipose
26	chr2:190433800-190438200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:190434000-190440800	Weak transcription	Primary B cells from cord blood	blood
28	chr2:190434200-190444800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:190434400-190439400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:190434400-190439400	Weak transcription	HUVEC	blood vessel
31	chr2:190434400-190440000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:190434400-190440200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr2:190434400-190441800	Weak transcription	Fetal Stomach	stomach
34	chr2:190434400-190442000	Weak transcription	Brain Anterior Caudate	brain
35	chr2:190434400-190444400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr2:190434600-190437800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:190435000-190440200	Strong transcription	Stomach Smooth Muscle	stomach
38	chr2:190435200-190438000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr2:190435200-190439000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr2:190435400-190438000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr2:190435400-190438200	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:190435400-190438400	Genic enhancers	Fetal Lung	lung
43	chr2:190435400-190438600	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr2:190435400-190438800	Strong transcription	Colon Smooth Muscle	Colon
45	chr2:190435400-190439400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr2:190435400-190440200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr2:190435400-190441600	Strong transcription	K562	blood
48	chr2:190435600-190437800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:190435600-190438200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr2:190435800-190437800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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