Variant report

Variant	rs16831701
Chromosome Location	chr2:190448104-190448105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11568345	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190446000-190448200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:190446000-190449400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:190446800-190448400	Enhancers	Primary hematopoietic stem cells	blood
4	chr2:190446800-190450200	Weak transcription	HUVEC	blood vessel
5	chr2:190446800-190450400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:190447000-190448600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr2:190447000-190448600	Weak transcription	Ovary	ovary
8	chr2:190447000-190448600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:190447000-190449600	Weak transcription	Stomach Mucosa	stomach
10	chr2:190447200-190449200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:190447400-190448600	Weak transcription	Liver	Liver
12	chr2:190447400-190448600	Weak transcription	Fetal Intestine Large	intestine
13	chr2:190447400-190449200	Active TSS	K562	blood
14	chr2:190447400-190452200	Weak transcription	Primary T cells from cord blood	blood
15	chr2:190447600-190448600	Weak transcription	Fetal Intestine Small	intestine
16	chr2:190447600-190449400	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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