Variant report

Variant	rs11568659
Chromosome Location	chr13:95768252-95768253
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95766396..95768415-chr13:95805096..95807111,2	MCF-7	breast:
2	chr13:95364033..95366306-chr13:95767895..95769988,2	MCF-7	breast:
3	chr13:95757108..95759848-chr13:95767830..95770575,2	K562	blood:
4	chr13:95767278..95770224-chr13:95779723..95782766,3	MCF-7	breast:
5	chr13:95761575..95764316-chr13:95765997..95769337,3	MCF-7	breast:
6	chr13:95751490..95755868-chr13:95765298..95769920,8	MCF-7	breast:
7	chr13:95766377..95768338-chr13:95772675..95774373,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125285	Chromatin interaction
ENSG00000227640	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11568639	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11568644	1.00[MEX][hapmap]
rs11568645	1.00[GIH][hapmap]
rs11568653	1.00[CEU][hapmap]
rs11568705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs16950823	1.00[GIH][hapmap]
rs1729762	1.00[GIH][hapmap]
rs3765534	1.00[CEU][hapmap]
rs9561800	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:95728400-95778800	Weak transcription	Ovary	ovary
4	chr13:95728600-95776000	Weak transcription	Gastric	stomach
5	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr13:95740600-95772200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:95740800-95791200	Weak transcription	NHLF	lung
8	chr13:95741600-95772600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:95750400-95812400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr13:95750400-95815400	Weak transcription	Fetal Intestine Large	intestine
11	chr13:95751000-95793400	Weak transcription	Fetal Kidney	kidney
12	chr13:95751400-95777600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:95751600-95795600	Weak transcription	Small Intestine	intestine
14	chr13:95752000-95789000	Weak transcription	Aorta	Aorta
15	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:95753400-95775400	Weak transcription	HSMMtube	muscle
18	chr13:95753600-95772600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:95754000-95777200	Weak transcription	NHDF-Ad	bronchial
20	chr13:95754000-95794800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:95754400-95782600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:95755000-95774200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr13:95755400-95776400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:95756400-95828200	Weak transcription	HSMM	muscle
25	chr13:95757600-95772800	Weak transcription	Lung	lung
26	chr13:95757600-95814400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr13:95758000-95791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr13:95758200-95769200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:95758200-95774000	Weak transcription	Primary T cells from cord blood	blood
30	chr13:95758400-95772800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr13:95758600-95769200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:95761400-95789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:95761600-95769000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:95761600-95774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr13:95762200-95817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:95762400-95774000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr13:95762400-95811800	Weak transcription	K562	blood
38	chr13:95763000-95774000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr13:95763600-95769000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:95764400-95768400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr13:95765600-95777400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr13:95766400-95768600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr13:95766800-95769400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:95767000-95769000	Weak transcription	Esophagus	oesophagus
45	chr13:95767400-95768400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:95767400-95768800	Weak transcription	Stomach Mucosa	stomach
47	chr13:95767600-95776000	Weak transcription	Pancreas	Pancrea
48	chr13:95767600-95779800	Weak transcription	Fetal Lung	lung
49	chr13:95767800-95769000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr13:95768000-95768600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links