Variant report

Variant	rs3765534
Chromosome Location	chr13:95815415-95815416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95815115..95817034-chr13:95818445..95820987,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11568639	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs11568644	1.00[YRI][hapmap]
rs11568653	1.00[CEU][hapmap]
rs11568656	1.00[LWK][hapmap]
rs11568659	1.00[CEU][hapmap]
rs11568705	1.00[CEU][hapmap];1.00[LWK][hapmap]
rs11618517	1.00[LWK][hapmap]
rs12853814	1.00[LWK][hapmap]
rs12864049	1.00[LWK][hapmap]
rs12864844	1.00[LWK][hapmap]
rs12875235	1.00[LWK][hapmap]
rs17189292	1.00[LWK][hapmap]
rs1729743	0.84[AMR][1000 genomes]
rs4148504	1.00[AMR][1000 genomes]
rs4148524	1.00[LWK][hapmap]
rs4771905	1.00[LWK][hapmap]
rs59383131	0.91[AMR][1000 genomes]
rs7988271	0.85[CHB][hapmap];1.00[AMR][1000 genomes]
rs7993886	1.00[AMR][1000 genomes]
rs9516516	1.00[LWK][hapmap]
rs9516519	1.00[LWK][hapmap]
rs9516520	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:95756400-95828200	Weak transcription	HSMM	muscle
4	chr13:95762200-95817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:95768200-95819000	Weak transcription	Fetal Intestine Small	intestine
6	chr13:95774600-95815800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
8	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:95787800-95827200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr13:95789200-95817600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:95791000-95821400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr13:95792600-95817000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:95792800-95815800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
15	chr13:95806600-95817400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:95806800-95817000	Weak transcription	Fetal Stomach	stomach
17	chr13:95806800-95826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:95807000-95817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:95807000-95817400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:95807000-95826800	Weak transcription	NH-A	brain
21	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
22	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
23	chr13:95807200-95820000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
26	chr13:95807400-95816800	Weak transcription	Small Intestine	intestine
27	chr13:95807400-95818400	Weak transcription	HMEC	breast
28	chr13:95807400-95827000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr13:95807400-95828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr13:95807600-95817200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:95807600-95824600	Weak transcription	HUVEC	blood vessel
33	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr13:95807800-95816800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr13:95807800-95825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:95808200-95826600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:95808200-95841800	Weak transcription	Osteobl	bone
38	chr13:95808400-95826200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
40	chr13:95808400-95854600	Weak transcription	NHEK	skin
41	chr13:95808600-95827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:95808600-95827200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr13:95810200-95817600	Weak transcription	Ovary	ovary
45	chr13:95810400-95822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
47	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
48	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
49	chr13:95810800-95817800	Weak transcription	Left Ventricle	heart
50	chr13:95810800-95826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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