Variant report

Variant	rs9516516
Chromosome Location	chr13:95669633-95669634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:95669326-95670387	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-62P	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11070108	0.91[CEU][hapmap]
rs11568639	1.00[LWK][hapmap]
rs11568656	1.00[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];1.00[AFR][1000 genomes]
rs11568672	1.00[AFR][1000 genomes]
rs11568705	1.00[LWK][hapmap]
rs11616336	1.00[AFR][1000 genomes]
rs11616452	1.00[AFR][1000 genomes]
rs11617958	1.00[AFR][1000 genomes]
rs11617982	1.00[AFR][1000 genomes]
rs11618517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11619067	1.00[AFR][1000 genomes]
rs12853814	1.00[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs12856105	1.00[AFR][1000 genomes]
rs12860875	1.00[AFR][1000 genomes]
rs12862417	1.00[AFR][1000 genomes]
rs12864049	1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs12864844	1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs12868310	1.00[AFR][1000 genomes]
rs12871463	1.00[AFR][1000 genomes]
rs12871881	1.00[AFR][1000 genomes]
rs12873440	1.00[AFR][1000 genomes]
rs12875235	1.00[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs1678392	0.81[MEX][hapmap]
rs17189292	0.81[CEU][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs17268066	1.00[AFR][1000 genomes]
rs34334004	1.00[AFR][1000 genomes]
rs34545664	1.00[AFR][1000 genomes]
rs34556191	1.00[AFR][1000 genomes]
rs34613994	1.00[AFR][1000 genomes]
rs34820355	1.00[AFR][1000 genomes]
rs34843402	1.00[AFR][1000 genomes]
rs34926569	1.00[AFR][1000 genomes]
rs35079174	1.00[AFR][1000 genomes]
rs35262170	1.00[AFR][1000 genomes]
rs35302250	1.00[AFR][1000 genomes]
rs35487217	1.00[AFR][1000 genomes]
rs35649151	1.00[AFR][1000 genomes]
rs35674589	1.00[AFR][1000 genomes]
rs35781706	1.00[AFR][1000 genomes]
rs36096489	1.00[AFR][1000 genomes]
rs36113741	1.00[AFR][1000 genomes]
rs3765534	1.00[LWK][hapmap]
rs4148524	1.00[LWK][hapmap];0.96[MKK][hapmap]
rs4274307	0.91[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs4584690	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs4771905	1.00[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[AFR][1000 genomes]
rs71431487	1.00[AFR][1000 genomes]
rs71431499	1.00[AFR][1000 genomes]
rs71433006	1.00[AFR][1000 genomes]
rs7321974	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7335912	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7997839	0.81[MEX][hapmap]
rs9302038	0.98[EUR][1000 genomes]
rs9516499	1.00[AFR][1000 genomes]
rs9516503	1.00[AFR][1000 genomes]
rs9516518	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516520	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516521	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524693	1.00[AFR][1000 genomes]
rs9524715	1.00[AFR][1000 genomes]
rs9524718	1.00[AFR][1000 genomes]
rs9524726	1.00[AFR][1000 genomes]
rs9524747	1.00[AFR][1000 genomes]
rs9524757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524762	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524764	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9645883	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95666800-95681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:95668000-95671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:95668600-95712000	Weak transcription	NHDF-Ad	bronchial
6	chr13:95669000-95680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:95669000-95686400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:95669200-95671600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr13:95669200-95672200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:95669200-95672200	Weak transcription	A549	lung
11	chr13:95669400-95671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:95669400-95672200	Weak transcription	K562	blood
13	chr13:95669400-95672600	Weak transcription	Primary T cells from cord blood	blood
14	chr13:95669400-95672600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:95669400-95686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:95669400-95690800	Weak transcription	Ovary	ovary
17	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:95669600-95672600	Weak transcription	GM12878-XiMat	blood
19	chr13:95669600-95686200	Weak transcription	NHLF	lung
20	chr13:95669600-95692000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine

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