Variant report

Variant	rs7321974
Chromosome Location	chr13:95665658-95665659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95660577..95664387-chr13:95665286..95667497,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070108	0.81[CEU][hapmap]
rs11568656	0.80[MEX][hapmap]
rs11618517	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12853814	0.80[MEX][hapmap]
rs12875235	0.80[MEX][hapmap]
rs1678392	0.87[MEX][hapmap]
rs17189292	0.80[MEX][hapmap]
rs4274307	0.81[CEU][hapmap];0.93[MEX][hapmap]
rs4584690	0.81[CEU][hapmap]
rs4771905	0.80[MEX][hapmap]
rs7335912	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73553690	0.95[AFR][1000 genomes]
rs7997839	0.87[MEX][hapmap]
rs9302038	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516516	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516518	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516519	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516520	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516521	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9524757	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9524762	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9524764	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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