Variant report
| Variant | rs73553690 |
|---|---|
| Chromosome Location | chr13:95665844-95665845 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:95660577..95664387-chr13:95665286..95667497,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11839175 | 1.00[EUR][1000 genomes] |
| rs11840606 | 1.00[EUR][1000 genomes] |
| rs11841559 | 1.00[EUR][1000 genomes] |
| rs11841597 | 1.00[EUR][1000 genomes] |
| rs11843668 | 1.00[EUR][1000 genomes] |
| rs1925854 | 1.00[EUR][1000 genomes] |
| rs6492760 | 1.00[EUR][1000 genomes] |
| rs7321974 | 0.95[AFR][1000 genomes] |
| rs7335912 | 0.93[AFR][1000 genomes] |
| rs73551609 | 1.00[EUR][1000 genomes] |
| rs73551612 | 1.00[EUR][1000 genomes] |
| rs73551620 | 1.00[EUR][1000 genomes] |
| rs73551628 | 1.00[EUR][1000 genomes] |
| rs73551633 | 1.00[EUR][1000 genomes] |
| rs73551636 | 1.00[EUR][1000 genomes] |
| rs73551639 | 1.00[EUR][1000 genomes] |
| rs73551640 | 1.00[EUR][1000 genomes] |
| rs73551643 | 1.00[EUR][1000 genomes] |
| rs73551645 | 1.00[EUR][1000 genomes] |
| rs73551647 | 1.00[EUR][1000 genomes] |
| rs73551665 | 1.00[EUR][1000 genomes] |
| rs73553608 | 1.00[EUR][1000 genomes] |
| rs73553615 | 1.00[EUR][1000 genomes] |
| rs73553661 | 1.00[EUR][1000 genomes] |
| rs73553674 | 1.00[EUR][1000 genomes] |
| rs73557797 | 1.00[EUR][1000 genomes] |
| rs7981159 | 1.00[EUR][1000 genomes] |
| rs7982193 | 1.00[EUR][1000 genomes] |
| rs7996263 | 1.00[EUR][1000 genomes] |
| rs7998670 | 1.00[EUR][1000 genomes] |
| rs9584272 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832688 | chr13:95633193-95780198 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95655600-95722600 | Weak transcription | Gastric | stomach |
| 2 | chr13:95661400-95694000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
