Variant report

Variant	rs73551636
Chromosome Location	chr13:95621254-95621255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95619254..95622585-chr13:95624903..95627476,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11839175	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11840606	1.00[EUR][1000 genomes]
rs11841559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841597	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1925854	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1925874	1.00[AMR][1000 genomes]
rs1925875	1.00[AMR][1000 genomes]
rs1925877	1.00[AMR][1000 genomes]
rs2182264	1.00[AMR][1000 genomes]
rs6492760	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551609	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551612	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551620	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551628	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551633	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551639	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551645	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551647	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551665	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553608	1.00[EUR][1000 genomes]
rs73553615	1.00[EUR][1000 genomes]
rs73553661	1.00[EUR][1000 genomes]
rs73553674	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553690	1.00[EUR][1000 genomes]
rs73557797	1.00[EUR][1000 genomes]
rs7981159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7982193	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996263	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7998670	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524745	1.00[AMR][1000 genomes]
rs9584272	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv274954	chr13:95617339-95621812	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3405940	chr13:95618976-95621724	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95619600-95621400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:95619600-95621400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
5	chr13:95619800-95621400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr13:95620600-95621400	Bivalent Enhancer	Fetal Intestine Large	intestine
7	chr13:95621000-95621400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:95621000-95621400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:95621000-95621600	Bivalent Enhancer	Stomach Mucosa	stomach
10	chr13:95621000-95621800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr13:95621000-95621800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:95621200-95621400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr13:95621200-95621400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
14	chr13:95621200-95621400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:95621200-95621400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr13:95621200-95621400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:95621200-95621400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:95621200-95621400	Enhancers	Brain Anterior Caudate	brain
19	chr13:95621200-95621400	Bivalent Enhancer	Brain Germinal Matrix	brain
20	chr13:95621200-95621400	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
21	chr13:95621200-95621400	Bivalent Enhancer	Fetal Lung	lung
22	chr13:95621200-95621400	Flanking Active TSS	A549	lung
23	chr13:95621200-95621400	Bivalent Enhancer	Osteobl	bone
24	chr13:95621200-95621600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:95621200-95621600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:95621200-95621600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr13:95621200-95621600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr13:95621200-95621600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
29	chr13:95621200-95621600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr13:95621200-95621600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr13:95621200-95626400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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