Variant report
Variant | rs1925875 |
---|---|
Chromosome Location | chr13:95633539-95633540 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11839175 | 0.87[AMR][1000 genomes] |
rs11841559 | 1.00[AMR][1000 genomes] |
rs11841597 | 0.87[AMR][1000 genomes] |
rs11843668 | 1.00[AMR][1000 genomes] |
rs1925854 | 0.87[AMR][1000 genomes] |
rs1925874 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1925877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2182264 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6492758 | 0.86[AFR][1000 genomes] |
rs6492760 | 0.87[AMR][1000 genomes] |
rs73551609 | 0.87[AMR][1000 genomes] |
rs73551612 | 0.87[AMR][1000 genomes] |
rs73551620 | 0.87[AMR][1000 genomes] |
rs73551628 | 0.87[AMR][1000 genomes] |
rs73551633 | 0.87[AMR][1000 genomes] |
rs73551636 | 1.00[AMR][1000 genomes] |
rs73551639 | 0.87[AMR][1000 genomes] |
rs73551640 | 1.00[AMR][1000 genomes] |
rs73551643 | 1.00[AMR][1000 genomes] |
rs73551645 | 1.00[AMR][1000 genomes] |
rs73551647 | 0.87[AMR][1000 genomes] |
rs73551665 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73553674 | 0.89[AMR][1000 genomes] |
rs7981159 | 1.00[AMR][1000 genomes] |
rs7982193 | 1.00[AMR][1000 genomes] |
rs7987195 | 0.86[AFR][1000 genomes] |
rs7996263 | 0.87[AMR][1000 genomes] |
rs7998670 | 0.87[AMR][1000 genomes] |
rs9524745 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832688 | chr13:95633193-95780198 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:95627200-95635800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
2 | chr13:95631400-95635800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |