Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR180-7	chr13:95667247-95667933	NONHSAT034747

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070108	0.91[CEU][hapmap]
rs11568656	0.80[MEX][hapmap]
rs11618517	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12853814	0.80[MEX][hapmap]
rs12875235	0.80[MEX][hapmap]
rs1678392	0.87[MEX][hapmap]
rs17189292	0.81[CEU][hapmap];0.80[MEX][hapmap]
rs4274307	0.91[CEU][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap]
rs4584690	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs4771905	0.80[MEX][hapmap]
rs7321974	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73553690	0.93[AFR][1000 genomes]
rs7997839	0.87[MEX][hapmap]
rs9302038	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516516	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516518	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516519	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516520	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516521	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9524757	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9524762	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9524764	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95666800-95681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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