Variant report

Variant	rs9524757
Chromosome Location	chr13:95666651-95666652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11618517	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7321974	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7335912	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9302038	0.98[EUR][1000 genomes]
rs9516516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516518	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524764	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95666600-95666800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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