Variant report

Variant	rs12871881
Chromosome Location	chr13:95621197-95621198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95619254..95622585-chr13:95624903..95627476,4	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11568656	1.00[AFR][1000 genomes]
rs11568672	1.00[AFR][1000 genomes]
rs11616336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11616452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11617958	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617982	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11618517	1.00[AFR][1000 genomes]
rs11619067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12853814	1.00[AFR][1000 genomes]
rs12856105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12860875	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12862417	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12864049	1.00[AFR][1000 genomes]
rs12864844	1.00[AFR][1000 genomes]
rs12868310	1.00[AFR][1000 genomes]
rs12871463	1.00[AFR][1000 genomes]
rs12873440	1.00[AFR][1000 genomes]
rs12875235	1.00[AFR][1000 genomes]
rs17189292	1.00[AFR][1000 genomes]
rs17268066	1.00[AFR][1000 genomes]
rs34334004	1.00[AFR][1000 genomes]
rs34545664	1.00[AFR][1000 genomes]
rs34556191	1.00[AFR][1000 genomes]
rs34613994	1.00[AFR][1000 genomes]
rs34820355	1.00[AFR][1000 genomes]
rs34843402	1.00[AFR][1000 genomes]
rs34926569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35079174	1.00[AFR][1000 genomes]
rs35262170	1.00[AFR][1000 genomes]
rs35302250	1.00[AFR][1000 genomes]
rs35487217	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35649151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35674589	1.00[AFR][1000 genomes]
rs35781706	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36096489	1.00[AFR][1000 genomes]
rs36113741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4771905	1.00[AFR][1000 genomes]
rs6492758	0.93[EUR][1000 genomes]
rs66562849	0.89[EUR][1000 genomes]
rs71431487	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71431489	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71431491	0.88[EUR][1000 genomes]
rs71431499	1.00[AFR][1000 genomes]
rs71433006	1.00[AFR][1000 genomes]
rs7987195	0.93[EUR][1000 genomes]
rs7987307	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7988246	0.93[EUR][1000 genomes]
rs9516499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9516503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516516	1.00[AFR][1000 genomes]
rs9516519	1.00[AFR][1000 genomes]
rs9516520	1.00[AFR][1000 genomes]
rs9516521	1.00[AFR][1000 genomes]
rs9524693	1.00[AFR][1000 genomes]
rs9524709	1.00[CEU][hapmap]
rs9524715	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524747	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524762	1.00[AFR][1000 genomes]
rs9524764	1.00[AFR][1000 genomes]
rs9645883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv274954	chr13:95617339-95621812	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3405940	chr13:95618976-95621724	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95619400-95621200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:95619400-95621200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:95619400-95621200	Active TSS	A549	lung
4	chr13:95619600-95621200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95619600-95621200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr13:95619600-95621200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95619600-95621200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr13:95619600-95621200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr13:95619600-95621200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr13:95619600-95621200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:95619600-95621200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:95619600-95621200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:95619600-95621200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:95619600-95621200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:95619600-95621200	Active TSS	Brain Substantia Nigra	brain
16	chr13:95619600-95621200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr13:95619600-95621200	Bivalent/Poised TSS	HSMMtube	muscle
18	chr13:95619600-95621200	Bivalent/Poised TSS	NHEK	skin
19	chr13:95619600-95621400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:95619600-95621400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
22	chr13:95619600-95621400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr13:95619800-95621200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:95619800-95621200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:95619800-95621200	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr13:95619800-95621200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:95619800-95621200	Active TSS	Brain Cingulate Gyrus	brain
28	chr13:95619800-95621200	Bivalent/Poised TSS	Esophagus	oesophagus
29	chr13:95619800-95621200	Bivalent/Poised TSS	HSMM	muscle
30	chr13:95619800-95621400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr13:95620000-95621200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:95620000-95621200	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr13:95620200-95621200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr13:95620200-95621200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr13:95620200-95621200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr13:95620200-95621200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
37	chr13:95620400-95621200	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr13:95620400-95621200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
39	chr13:95620400-95621200	Enhancers	Pancreas	Pancrea
40	chr13:95620600-95621200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:95620600-95621200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
42	chr13:95620600-95621200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr13:95620600-95621200	Bivalent/Poised TSS	Fetal Kidney	kidney
44	chr13:95620600-95621200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
45	chr13:95620600-95621200	ZNF genes & repeats	Spleen	Spleen
46	chr13:95620600-95621400	Bivalent Enhancer	Fetal Intestine Large	intestine
47	chr13:95620800-95621200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
48	chr13:95620800-95621200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr13:95620800-95621200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
50	chr13:95620800-95621200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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