Variant report

Variant	rs71431489
Chromosome Location	chr13:95647907-95647908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11616336	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11616452	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11617958	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617982	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11619067	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12856105	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12860875	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12862417	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12871881	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34926569	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35487217	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35649151	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35781706	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36113741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6492758	0.84[EUR][1000 genomes]
rs66562849	0.81[EUR][1000 genomes]
rs71431487	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71431491	0.88[EUR][1000 genomes]
rs7987195	0.84[EUR][1000 genomes]
rs7987307	0.83[AMR][1000 genomes]
rs7988246	0.84[EUR][1000 genomes]
rs9516499	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516503	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9524715	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524718	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524726	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524747	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9645883	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95645200-95648400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:95645200-95648600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95645400-95648200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:95645400-95648400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:95645400-95650600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:95645600-95648400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:95645800-95648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:95646600-95654400	Weak transcription	Osteobl	bone
9	chr13:95647000-95648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:95647000-95648400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:95647000-95648400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:95647000-95648400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr13:95647000-95648400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:95647200-95648400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:95647400-95648400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:95647600-95648600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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