Variant report

Variant	rs11616336
Chromosome Location	chr13:95635122-95635123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11568656	1.00[AFR][1000 genomes]
rs11568672	1.00[AFR][1000 genomes]
rs11616452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11617958	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617982	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11618517	1.00[AFR][1000 genomes]
rs11619067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12853814	1.00[AFR][1000 genomes]
rs12856105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12860875	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12862417	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12864049	1.00[AFR][1000 genomes]
rs12864844	1.00[AFR][1000 genomes]
rs12868310	1.00[AFR][1000 genomes]
rs12871463	1.00[AFR][1000 genomes]
rs12871881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12873440	1.00[AFR][1000 genomes]
rs12875235	1.00[AFR][1000 genomes]
rs17189292	1.00[AFR][1000 genomes]
rs17268066	1.00[AFR][1000 genomes]
rs34334004	1.00[AFR][1000 genomes]
rs34545664	1.00[AFR][1000 genomes]
rs34556191	1.00[AFR][1000 genomes]
rs34613994	1.00[AFR][1000 genomes]
rs34820355	1.00[AFR][1000 genomes]
rs34843402	1.00[AFR][1000 genomes]
rs34926569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35079174	1.00[AFR][1000 genomes]
rs35262170	1.00[AFR][1000 genomes]
rs35302250	1.00[AFR][1000 genomes]
rs35487217	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35649151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35674589	1.00[AFR][1000 genomes]
rs35781706	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36096489	1.00[AFR][1000 genomes]
rs36113741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4771905	1.00[AFR][1000 genomes]
rs6492758	0.84[EUR][1000 genomes]
rs66562849	0.81[EUR][1000 genomes]
rs71431487	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71431489	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71431491	0.88[EUR][1000 genomes]
rs71431499	1.00[AFR][1000 genomes]
rs71433006	1.00[AFR][1000 genomes]
rs7987195	0.84[EUR][1000 genomes]
rs7987307	0.86[AMR][1000 genomes]
rs7988246	0.84[EUR][1000 genomes]
rs9516499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516516	1.00[AFR][1000 genomes]
rs9516519	1.00[AFR][1000 genomes]
rs9516520	1.00[AFR][1000 genomes]
rs9516521	1.00[AFR][1000 genomes]
rs9524693	1.00[AFR][1000 genomes]
rs9524709	1.00[CEU][hapmap]
rs9524715	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524747	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524762	1.00[AFR][1000 genomes]
rs9524764	1.00[AFR][1000 genomes]
rs9645883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95627200-95635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:95631400-95635800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:95633600-95635600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links