Variant report
| Variant | rs66562849 |
|---|---|
| Chromosome Location | chr13:95616955-95616956 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:69)
| rs_ID | r2[population] |
|---|---|
| rs11616336 | 0.81[EUR][1000 genomes] |
| rs11616452 | 0.85[EUR][1000 genomes] |
| rs11617950 | 1.00[ASN][1000 genomes] |
| rs11619067 | 0.89[EUR][1000 genomes] |
| rs12856105 | 0.85[EUR][1000 genomes] |
| rs12860875 | 0.89[EUR][1000 genomes] |
| rs12862417 | 0.89[EUR][1000 genomes] |
| rs12871881 | 0.89[EUR][1000 genomes] |
| rs16950404 | 1.00[ASN][1000 genomes] |
| rs16950443 | 1.00[ASN][1000 genomes] |
| rs1925870 | 1.00[ASN][1000 genomes] |
| rs1925876 | 1.00[ASN][1000 genomes] |
| rs1925878 | 1.00[ASN][1000 genomes] |
| rs1925879 | 1.00[ASN][1000 genomes] |
| rs1952108 | 1.00[ASN][1000 genomes] |
| rs2148064 | 1.00[ASN][1000 genomes] |
| rs2148065 | 1.00[ASN][1000 genomes] |
| rs2148066 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2148067 | 1.00[ASN][1000 genomes] |
| rs2182265 | 1.00[ASN][1000 genomes] |
| rs2209539 | 1.00[ASN][1000 genomes] |
| rs2209540 | 1.00[ASN][1000 genomes] |
| rs2225007 | 1.00[ASN][1000 genomes] |
| rs34926569 | 0.89[EUR][1000 genomes] |
| rs35487217 | 0.89[EUR][1000 genomes] |
| rs35649151 | 0.89[EUR][1000 genomes] |
| rs35781706 | 0.85[EUR][1000 genomes] |
| rs36113741 | 0.85[EUR][1000 genomes] |
| rs41386448 | 1.00[ASN][1000 genomes] |
| rs4238311 | 1.00[ASN][1000 genomes] |
| rs4771903 | 0.84[ASN][1000 genomes] |
| rs55896076 | 1.00[ASN][1000 genomes] |
| rs55943137 | 1.00[ASN][1000 genomes] |
| rs60329452 | 1.00[ASN][1000 genomes] |
| rs60833033 | 0.91[ASN][1000 genomes] |
| rs61695658 | 1.00[ASN][1000 genomes] |
| rs6492758 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs66796852 | 0.91[ASN][1000 genomes] |
| rs67670273 | 0.91[ASN][1000 genomes] |
| rs71431487 | 0.85[EUR][1000 genomes] |
| rs71431489 | 0.81[EUR][1000 genomes] |
| rs72640796 | 1.00[ASN][1000 genomes] |
| rs72640799 | 1.00[ASN][1000 genomes] |
| rs72642310 | 1.00[ASN][1000 genomes] |
| rs72642313 | 1.00[ASN][1000 genomes] |
| rs72642322 | 0.91[ASN][1000 genomes] |
| rs72642324 | 0.91[ASN][1000 genomes] |
| rs7332543 | 0.91[ASN][1000 genomes] |
| rs7987195 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7988246 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7990475 | 1.00[ASN][1000 genomes] |
| rs8002563 | 1.00[ASN][1000 genomes] |
| rs9302031 | 1.00[ASN][1000 genomes] |
| rs9516499 | 0.89[EUR][1000 genomes] |
| rs9516503 | 0.85[EUR][1000 genomes] |
| rs9524715 | 0.89[EUR][1000 genomes] |
| rs9524718 | 0.89[EUR][1000 genomes] |
| rs9524726 | 0.83[EUR][1000 genomes] |
| rs9524731 | 1.00[ASN][1000 genomes] |
| rs9524740 | 1.00[ASN][1000 genomes] |
| rs9524743 | 1.00[ASN][1000 genomes] |
| rs9524744 | 1.00[ASN][1000 genomes] |
| rs9524746 | 1.00[ASN][1000 genomes] |
| rs9584270 | 1.00[ASN][1000 genomes] |
| rs9590146 | 1.00[ASN][1000 genomes] |
| rs9590147 | 1.00[ASN][1000 genomes] |
| rs9590149 | 1.00[ASN][1000 genomes] |
| rs9590153 | 1.00[ASN][1000 genomes] |
| rs9645883 | 0.89[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95616000-95618400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr13:95616200-95618000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr13:95616400-95618000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 4 | chr13:95616400-95619600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 5 | chr13:95616600-95617800 | Weak transcription | Stomach Mucosa | stomach |
