Variant report

Variant	rs16950404
Chromosome Location	chr13:95633898-95633899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11617950	1.00[ASN][1000 genomes]
rs16950443	1.00[ASN][1000 genomes]
rs1925870	1.00[ASN][1000 genomes]
rs1925876	1.00[ASN][1000 genomes]
rs1925878	1.00[ASN][1000 genomes]
rs1925879	1.00[ASN][1000 genomes]
rs1952108	1.00[ASN][1000 genomes]
rs2148064	1.00[ASN][1000 genomes]
rs2148065	1.00[ASN][1000 genomes]
rs2148066	1.00[ASN][1000 genomes]
rs2148067	1.00[ASN][1000 genomes]
rs2182265	1.00[ASN][1000 genomes]
rs2209539	1.00[ASN][1000 genomes]
rs2209540	1.00[ASN][1000 genomes]
rs2225007	1.00[ASN][1000 genomes]
rs41386448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238311	1.00[ASN][1000 genomes]
rs4771903	0.84[ASN][1000 genomes]
rs55896076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55943137	1.00[ASN][1000 genomes]
rs60326461	0.83[AFR][1000 genomes]
rs60329452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60833033	0.91[ASN][1000 genomes]
rs61695658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66562849	1.00[ASN][1000 genomes]
rs66796852	0.91[ASN][1000 genomes]
rs67670273	0.91[ASN][1000 genomes]
rs72640796	1.00[ASN][1000 genomes]
rs72640799	1.00[ASN][1000 genomes]
rs72642310	1.00[ASN][1000 genomes]
rs72642313	1.00[ASN][1000 genomes]
rs72642322	0.91[ASN][1000 genomes]
rs72642324	0.91[ASN][1000 genomes]
rs7332543	0.91[ASN][1000 genomes]
rs7990475	1.00[ASN][1000 genomes]
rs8002563	1.00[ASN][1000 genomes]
rs9302031	1.00[ASN][1000 genomes]
rs9524731	1.00[ASN][1000 genomes]
rs9524740	1.00[ASN][1000 genomes]
rs9524743	1.00[ASN][1000 genomes]
rs9524744	1.00[ASN][1000 genomes]
rs9524746	1.00[ASN][1000 genomes]
rs9584270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590149	1.00[ASN][1000 genomes]
rs9590153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16950404	ABCC4	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95627200-95635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:95631400-95635800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:95633600-95635600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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