Variant report

Variant	rs2209540
Chromosome Location	chr13:95639797-95639798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11617950	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950404	1.00[ASN][1000 genomes]
rs16950443	1.00[ASN][1000 genomes]
rs1925870	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1925876	1.00[ASN][1000 genomes]
rs1925878	1.00[ASN][1000 genomes]
rs1925879	1.00[ASN][1000 genomes]
rs1952108	1.00[ASN][1000 genomes]
rs2148064	1.00[ASN][1000 genomes]
rs2148065	1.00[ASN][1000 genomes]
rs2148066	1.00[ASN][1000 genomes]
rs2148067	1.00[ASN][1000 genomes]
rs2182265	1.00[ASN][1000 genomes]
rs2209539	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2225007	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34067449	0.84[EUR][1000 genomes]
rs34758312	0.84[EUR][1000 genomes]
rs41386448	1.00[ASN][1000 genomes]
rs4238311	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4771903	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs55896076	1.00[ASN][1000 genomes]
rs55943137	1.00[ASN][1000 genomes]
rs60329452	1.00[ASN][1000 genomes]
rs60833033	0.91[ASN][1000 genomes]
rs61695658	1.00[ASN][1000 genomes]
rs66562849	1.00[ASN][1000 genomes]
rs66796852	0.91[ASN][1000 genomes]
rs67670273	0.91[ASN][1000 genomes]
rs72640796	1.00[ASN][1000 genomes]
rs72640799	1.00[ASN][1000 genomes]
rs72642310	1.00[ASN][1000 genomes]
rs72642313	1.00[ASN][1000 genomes]
rs72642322	0.91[ASN][1000 genomes]
rs72642324	0.91[ASN][1000 genomes]
rs7332543	0.91[ASN][1000 genomes]
rs7990475	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002563	1.00[ASN][1000 genomes]
rs9302031	1.00[ASN][1000 genomes]
rs9524731	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9524740	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9524743	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9524744	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9524746	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9584270	1.00[ASN][1000 genomes]
rs9590146	1.00[ASN][1000 genomes]
rs9590147	1.00[ASN][1000 genomes]
rs9590149	1.00[ASN][1000 genomes]
rs9590153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2761812	chr13:95639780-95643937	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95637600-95640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:95637600-95640800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:95637600-95645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:95638000-95644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:95639400-95641000	Enhancers	Stomach Mucosa	stomach

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