Variant report

Variant	rs9516499
Chromosome Location	chr13:95624566-95624567
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11568656	1.00[AFR][1000 genomes]
rs11568672	1.00[AFR][1000 genomes]
rs11616336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11616452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11617958	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617982	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11618517	1.00[AFR][1000 genomes]
rs11619067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12853814	1.00[AFR][1000 genomes]
rs12856105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12860875	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12862417	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12864049	1.00[AFR][1000 genomes]
rs12864844	1.00[AFR][1000 genomes]
rs12868310	1.00[AFR][1000 genomes]
rs12871463	1.00[AFR][1000 genomes]
rs12871881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12873440	1.00[AFR][1000 genomes]
rs12875235	1.00[AFR][1000 genomes]
rs17189292	1.00[AFR][1000 genomes]
rs17268066	1.00[AFR][1000 genomes]
rs34334004	1.00[AFR][1000 genomes]
rs34545664	1.00[AFR][1000 genomes]
rs34556191	1.00[AFR][1000 genomes]
rs34613994	1.00[AFR][1000 genomes]
rs34820355	1.00[AFR][1000 genomes]
rs34843402	1.00[AFR][1000 genomes]
rs34926569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35079174	1.00[AFR][1000 genomes]
rs35262170	1.00[AFR][1000 genomes]
rs35302250	1.00[AFR][1000 genomes]
rs35487217	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35649151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35674589	1.00[AFR][1000 genomes]
rs35781706	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36096489	1.00[AFR][1000 genomes]
rs36113741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4771905	1.00[AFR][1000 genomes]
rs6492758	0.93[EUR][1000 genomes]
rs66562849	0.89[EUR][1000 genomes]
rs71431487	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71431489	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71431491	0.88[EUR][1000 genomes]
rs71431499	1.00[AFR][1000 genomes]
rs71433006	1.00[AFR][1000 genomes]
rs7987195	0.93[EUR][1000 genomes]
rs7987307	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7988246	0.93[EUR][1000 genomes]
rs9516503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516516	1.00[AFR][1000 genomes]
rs9516519	1.00[AFR][1000 genomes]
rs9516520	1.00[AFR][1000 genomes]
rs9516521	1.00[AFR][1000 genomes]
rs9524693	1.00[AFR][1000 genomes]
rs9524715	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524747	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524762	1.00[AFR][1000 genomes]
rs9524764	1.00[AFR][1000 genomes]
rs9645883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95621200-95626400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:95621400-95625600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:95621600-95625800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:95622400-95626000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:95623600-95624800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:95624000-95624800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:95624000-95624800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:95624000-95624800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr13:95624000-95624800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:95624000-95625600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:95624200-95624600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:95624400-95624800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:95624400-95624800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:95624400-95626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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