Variant report

Variant	rs11617982
Chromosome Location	chr13:95650792-95650793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11568656	1.00[AFR][1000 genomes]
rs11568672	1.00[AFR][1000 genomes]
rs11616336	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11616452	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11617958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11618517	1.00[AFR][1000 genomes]
rs11619067	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12853814	1.00[AFR][1000 genomes]
rs12856105	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12860875	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12862417	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12864049	1.00[AFR][1000 genomes]
rs12864844	1.00[AFR][1000 genomes]
rs12868310	1.00[AFR][1000 genomes]
rs12871463	1.00[AFR][1000 genomes]
rs12871881	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12873440	1.00[AFR][1000 genomes]
rs12875235	1.00[AFR][1000 genomes]
rs17189292	1.00[AFR][1000 genomes]
rs17268066	1.00[AFR][1000 genomes]
rs34334004	1.00[AFR][1000 genomes]
rs34545664	1.00[AFR][1000 genomes]
rs34556191	1.00[AFR][1000 genomes]
rs34613994	1.00[AFR][1000 genomes]
rs34820355	1.00[AFR][1000 genomes]
rs34843402	1.00[AFR][1000 genomes]
rs34926569	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35079174	1.00[AFR][1000 genomes]
rs35262170	1.00[AFR][1000 genomes]
rs35302250	1.00[AFR][1000 genomes]
rs35487217	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35649151	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35674589	1.00[AFR][1000 genomes]
rs35781706	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36096489	1.00[AFR][1000 genomes]
rs36113741	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4771905	1.00[AFR][1000 genomes]
rs6492758	0.82[EUR][1000 genomes]
rs71431487	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71431489	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71431491	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71431499	1.00[AFR][1000 genomes]
rs71433006	1.00[AFR][1000 genomes]
rs7987195	0.82[EUR][1000 genomes]
rs7988246	0.82[EUR][1000 genomes]
rs9516499	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9516503	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516516	1.00[AFR][1000 genomes]
rs9516519	1.00[AFR][1000 genomes]
rs9516520	1.00[AFR][1000 genomes]
rs9516521	1.00[AFR][1000 genomes]
rs9524693	1.00[AFR][1000 genomes]
rs9524715	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9524718	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524726	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9524747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524762	1.00[AFR][1000 genomes]
rs9524764	1.00[AFR][1000 genomes]
rs9645883	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95646600-95654400	Weak transcription	Osteobl	bone
2	chr13:95648400-95650800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr13:95648400-95650800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:95648400-95650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:95648400-95651000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:95649200-95655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95649800-95651000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:95649800-95651000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:95649800-95651000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:95650400-95651200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:95650600-95650800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:95650600-95651200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:95650600-95654200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr13:95650600-95654600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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