Variant report

Variant	rs1156870
Chromosome Location	chr9:6418060-6418061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:6417329-6418130	GM12878	blood:	n/a	n/a
2	NFIC	chr9:6417142-6418147	GM12878	blood:	n/a	n/a
3	IKZF1	chr9:6417629-6418318	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:6412902..6414944-chr9:6415944..6418989,4	MCF-7	breast:
2	chr9:6417024..6418829-chr9:6426585..6429333,3	K562	blood:
3	chr9:6417292..6420636-chr9:6422611..6425827,4	K562	blood:
4	chr9:6417367..6418926-chr9:6465280..6467264,2	MCF-7	breast:
5	chr9:6417900..6420636-chr9:6424327..6426106,2	K562	blood:
6	chr9:6412634..6415362-chr9:6415861..6419998,11	K562	blood:

No data

Variant related genes	Relation type
UHRF2	TF binding region
ENSG00000147854	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs519674	1.00[EUR][1000 genomes]
rs56270454	1.00[EUR][1000 genomes]
rs58756210	1.00[EUR][1000 genomes]
rs59140789	1.00[EUR][1000 genomes]
rs73639304	1.00[EUR][1000 genomes]
rs73639305	1.00[EUR][1000 genomes]
rs73639306	1.00[EUR][1000 genomes]
rs73639308	1.00[EUR][1000 genomes]
rs73642515	1.00[EUR][1000 genomes]
rs73642516	1.00[EUR][1000 genomes]
rs73642517	1.00[EUR][1000 genomes]
rs73642519	1.00[EUR][1000 genomes]
rs73642521	1.00[EUR][1000 genomes]
rs7872736	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892160	chr9:6364449-6506038	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6414400-6427400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:6414600-6439400	Weak transcription	Colonic Mucosa	Colon
3	chr9:6414600-6449000	Weak transcription	Gastric	stomach
4	chr9:6414600-6449200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:6414600-6451800	Weak transcription	Esophagus	oesophagus
6	chr9:6414600-6477800	Weak transcription	Placenta	Placenta
7	chr9:6414800-6422000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:6415400-6418800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:6415400-6418800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:6415400-6419400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:6415400-6419600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:6415400-6419600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:6415400-6425400	Weak transcription	Psoas Muscle	Psoas
14	chr9:6415400-6434000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:6415600-6418600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:6415600-6418600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:6415600-6419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:6415600-6419400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:6415600-6419400	Enhancers	Primary B cells from cord blood	blood
20	chr9:6415600-6420800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:6415600-6421000	Weak transcription	Fetal Intestine Large	intestine
22	chr9:6415600-6422000	Weak transcription	Fetal Kidney	kidney
23	chr9:6415600-6422200	Weak transcription	Lung	lung
24	chr9:6415600-6423200	Weak transcription	Stomach Mucosa	stomach
25	chr9:6415600-6430000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:6415600-6431000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:6415600-6441200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr9:6415600-6471400	Weak transcription	Aorta	Aorta
29	chr9:6415800-6419400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:6415800-6442800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:6416000-6420000	Weak transcription	Fetal Intestine Small	intestine
32	chr9:6416000-6438400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:6416200-6418800	Weak transcription	Right Atrium	heart
34	chr9:6416200-6418800	Active TSS	GM12878-XiMat	blood
35	chr9:6416200-6419200	Enhancers	Brain Cingulate Gyrus	brain
36	chr9:6416200-6419800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:6416400-6418600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr9:6416400-6419000	Enhancers	Fetal Brain Male	brain
39	chr9:6416400-6420600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:6416400-6421400	Weak transcription	Left Ventricle	heart
41	chr9:6416400-6421400	Weak transcription	Pancreas	Pancrea
42	chr9:6416400-6429800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:6416400-6430000	Weak transcription	Spleen	Spleen
44	chr9:6416400-6430600	Weak transcription	Right Ventricle	heart
45	chr9:6416400-6449200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:6416600-6418200	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr9:6416600-6419000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:6416600-6419400	Enhancers	Primary B cells from peripheral blood	blood
49	chr9:6416600-6420000	Weak transcription	Fetal Thymus	thymus
50	chr9:6416600-6421400	Weak transcription	Fetal Muscle Leg	muscle

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