Variant report

Variant	rs73639306
Chromosome Location	chr9:6486061-6486062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1156870	1.00[EUR][1000 genomes]
rs519674	1.00[EUR][1000 genomes]
rs56270454	1.00[EUR][1000 genomes]
rs58756210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59140789	1.00[EUR][1000 genomes]
rs73639304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73639305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73639308	1.00[EUR][1000 genomes]
rs73642515	1.00[EUR][1000 genomes]
rs73642516	1.00[EUR][1000 genomes]
rs73642517	1.00[EUR][1000 genomes]
rs73642519	1.00[EUR][1000 genomes]
rs73642521	1.00[EUR][1000 genomes]
rs7872736	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892160	chr9:6364449-6506038	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv1029766	chr9:6437020-6523605	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
13	esv3415944	chr9:6482061-6486840	Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6452600-6488000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:6458800-6497200	Weak transcription	Colonic Mucosa	Colon
3	chr9:6459400-6501800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:6460600-6486800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:6463600-6518400	Weak transcription	Fetal Brain Male	brain
6	chr9:6467400-6486200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:6467400-6497200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:6471600-6501800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:6471600-6504600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:6472200-6497200	Weak transcription	Aorta	Aorta
11	chr9:6472200-6508200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:6473000-6491600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:6473000-6499600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:6473800-6498400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:6473800-6506200	Weak transcription	Small Intestine	intestine
16	chr9:6474400-6490600	Strong transcription	HUVEC	blood vessel
17	chr9:6474800-6502800	Strong transcription	Dnd41	blood
18	chr9:6475000-6488400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:6475200-6503000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr9:6475400-6490400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:6475400-6491800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:6475400-6491800	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr9:6475400-6494400	Strong transcription	Fetal Thymus	thymus
24	chr9:6475400-6508200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr9:6475400-6508400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:6475400-6508800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr9:6475400-6508800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr9:6475600-6494800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:6475800-6488200	Strong transcription	Adipose Nuclei	Adipose
30	chr9:6475800-6491000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:6475800-6491800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:6475800-6492000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:6475800-6492800	Strong transcription	GM12878-XiMat	blood
34	chr9:6475800-6493000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:6475800-6493400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr9:6475800-6497200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:6475800-6509000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:6475800-6510800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:6476000-6509400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:6476600-6491800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:6476600-6494400	Strong transcription	Osteobl	bone
42	chr9:6477400-6487200	Strong transcription	NH-A	brain
43	chr9:6477400-6488400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:6477600-6487400	Strong transcription	NHDF-Ad	bronchial
45	chr9:6477600-6487600	Strong transcription	Primary B cells from cord blood	blood
46	chr9:6477600-6489800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:6477600-6490800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr9:6477600-6491800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:6477600-6497800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:6477600-6507800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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