Variant report

Variant	rs11568740
Chromosome Location	chr9:101865884-101865885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr9:101865057-101868900	IMR90	lung:	n/a	chr9:101867130-101867140 chr9:101867134-101867143 chr9:101867474-101867484 chr9:101866665-101866675
2	CHD1	chr9:101865310-101870084	IMR90	lung:	n/a	n/a
3	EP300	chr9:101865188-101865960	A549	lung:	n/a	chr9:101865848-101865862
4	FOSL2	chr9:101865238-101865914	A549	lung:	n/a	chr9:101865321-101865332
5	GATA3	chr9:101865112-101865950	A549	lung:	n/a	chr9:101865755-101865767 chr9:101865750-101865771 chr9:101865757-101865764 chr9:101865757-101865764 chr9:101865757-101865764
6	POLR2A	chr9:101865468-101870413	IMR90	lung:	n/a	n/a
7	MXI1	chr9:101865375-101868682	IMR90	lung:	n/a	n/a
8	TCF12	chr9:101865147-101865898	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:

Variant related genes	Relation type
TGFBR1	TF binding region
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11568762	1.00[AFR][1000 genomes]
rs11568804	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:101858800-101866200	Weak transcription	Primary T cells from cord blood	blood
4	chr9:101859400-101866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101862400-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:101862400-101866200	Weak transcription	Dnd41	blood
7	chr9:101863400-101866000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:101863400-101866000	Weak transcription	Fetal Thymus	thymus
9	chr9:101863600-101866000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:101863600-101866200	Enhancers	K562	blood
11	chr9:101864400-101866600	Enhancers	Stomach Mucosa	stomach
12	chr9:101864600-101866200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:101865000-101866000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:101865000-101866000	Enhancers	Colon Smooth Muscle	Colon
15	chr9:101865000-101866400	Enhancers	Fetal Muscle Leg	muscle
16	chr9:101865000-101866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:101865200-101866000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr9:101865200-101866600	Weak transcription	Small Intestine	intestine
19	chr9:101865200-101867000	Flanking Active TSS	A549	lung
20	chr9:101865400-101866000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:101865400-101866000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr9:101865400-101866000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:101865400-101866000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:101865400-101866000	Enhancers	Adipose Nuclei	Adipose
25	chr9:101865400-101866000	Enhancers	Stomach Smooth Muscle	stomach
26	chr9:101865400-101866200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:101865400-101866200	Enhancers	NHDF-Ad	bronchial
28	chr9:101865400-101866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:101865400-101866400	Enhancers	Aorta	Aorta
30	chr9:101865400-101866400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr9:101865400-101866400	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:101865600-101866200	Enhancers	Fetal Stomach	stomach
33	chr9:101865600-101866400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr9:101865600-101866400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr9:101865600-101866600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:101865800-101866000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr9:101865800-101866000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
38	chr9:101865800-101866000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:101865800-101866000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:101865800-101866000	Enhancers	Brain Germinal Matrix	brain
41	chr9:101865800-101866000	Enhancers	Fetal Brain Female	brain
42	chr9:101865800-101866000	Flanking Active TSS	Fetal Intestine Large	intestine
43	chr9:101865800-101866000	Enhancers	Osteobl	bone
44	chr9:101865800-101866200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:101865800-101866200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr9:101865800-101866200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr9:101865800-101866200	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr9:101865800-101866200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:101865800-101866200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:101865800-101866200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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