Variant report

Variant	rs11568762
Chromosome Location	chr9:101892898-101892899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:
2	chr9:101892307..101894451-chr9:101895329..101898067,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11568740	1.00[AFR][1000 genomes]
rs11568804	1.00[AFR][1000 genomes]
rs3780616	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101875600-101894600	Weak transcription	Spleen	Spleen
5	chr9:101876600-101904200	Weak transcription	Liver	Liver
6	chr9:101878000-101897400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:101882000-101893400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:101882000-101893400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr9:101882000-101895000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:101882200-101901400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr9:101882200-101903000	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:101882400-101893200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:101882400-101894600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:101883000-101900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:101884600-101897200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:101884800-101894400	Weak transcription	Aorta	Aorta
18	chr9:101885200-101896800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:101885200-101901600	Weak transcription	A549	lung
20	chr9:101887200-101893600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:101888000-101893800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr9:101888200-101907000	Weak transcription	HepG2	liver
23	chr9:101888400-101896600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:101889400-101904000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:101889600-101901000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:101889800-101904400	Weak transcription	Lung	lung
27	chr9:101890000-101894400	Weak transcription	Esophagus	oesophagus
28	chr9:101890000-101894600	Weak transcription	Left Ventricle	heart
29	chr9:101890000-101897800	Weak transcription	Small Intestine	intestine
30	chr9:101890000-101900800	Weak transcription	Fetal Intestine Small	intestine
31	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
32	chr9:101890200-101896600	Weak transcription	NHLF	lung
33	chr9:101890200-101904800	Weak transcription	Fetal Intestine Large	intestine
34	chr9:101890200-101907600	Weak transcription	Gastric	stomach
35	chr9:101890400-101894400	Weak transcription	Adipose Nuclei	Adipose
36	chr9:101890400-101896800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:101890400-101908400	Weak transcription	Hela-S3	cervix
38	chr9:101890600-101893200	Weak transcription	NHDF-Ad	bronchial
39	chr9:101890600-101894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:101890600-101894400	Weak transcription	HSMM	muscle
41	chr9:101890600-101894600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:101890600-101894600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr9:101890600-101896600	Weak transcription	HSMMtube	muscle
44	chr9:101890600-101896800	Weak transcription	Fetal Brain Male	brain
45	chr9:101890600-101896800	Weak transcription	NH-A	brain
46	chr9:101890600-101897200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr9:101890600-101900200	Weak transcription	Ovary	ovary
48	chr9:101890600-101900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:101890600-101901600	Weak transcription	Fetal Lung	lung
50	chr9:101890600-101907000	Weak transcription	Muscle Satellite Cultured Cells	--

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