Variant report

Variant	rs11568742
Chromosome Location	chr9:101866291-101866292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:101866022-101868550	MCF10A-Er-Src	breast:	n/a	n/a
2	MAZ	chr9:101865057-101868900	IMR90	lung:	n/a	chr9:101867130-101867140 chr9:101867134-101867143 chr9:101867474-101867484 chr9:101866665-101866675
3	CHD1	chr9:101865310-101870084	IMR90	lung:	n/a	n/a
4	SIN3A	chr9:101865909-101868515	H1-hESC	embryonic stem cell:	n/a	chr9:101866899-101866908 chr9:101866946-101866954 chr9:101865947-101865956 chr9:101867101-101867112
5	POLR2A	chr9:101865468-101870413	IMR90	lung:	n/a	n/a
6	POLR2A	chr9:101866197-101867580	GM12891	blood:	n/a	n/a
7	MXI1	chr9:101865375-101868682	IMR90	lung:	n/a	n/a
8	POLR2A	chr9:101865965-101869202	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:101608539..101611289-chr9:101866226..101869142,2	MCF-7	breast:
2	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:
3	chr9:101632178..101635172-chr9:101866283..101867803,2	K562	blood:

Variant related genes	Relation type
TGFBR1	TF binding region
ENSG00000267026	Chromatin interaction
ENSG00000119514	Chromatin interaction
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17711860	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3327607	chr9:101866156-101869104	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101864400-101866600	Enhancers	Stomach Mucosa	stomach
2	chr9:101865000-101866400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:101865000-101866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:101865200-101866600	Weak transcription	Small Intestine	intestine
5	chr9:101865200-101867000	Flanking Active TSS	A549	lung
6	chr9:101865400-101866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:101865400-101866400	Enhancers	Aorta	Aorta
8	chr9:101865400-101866400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:101865400-101866400	Enhancers	Rectal Smooth Muscle	rectum
10	chr9:101865600-101866400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:101865600-101866400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:101865600-101866600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:101865800-101866400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:101865800-101866400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:101865800-101866400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:101865800-101866400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:101865800-101866400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:101865800-101866400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:101865800-101866400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr9:101865800-101866400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:101865800-101866400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:101865800-101866400	Enhancers	Colonic Mucosa	Colon
23	chr9:101865800-101866400	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:101865800-101866400	Enhancers	Placenta	Placenta
25	chr9:101865800-101866400	Enhancers	Gastric	stomach
26	chr9:101865800-101866400	Enhancers	Left Ventricle	heart
27	chr9:101865800-101866400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:101865800-101866400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr9:101865800-101866400	Enhancers	HMEC	breast
30	chr9:101865800-101866600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr9:101865800-101866600	Enhancers	Fetal Lung	lung
32	chr9:101865800-101866600	Enhancers	Lung	lung
33	chr9:101865800-101866800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr9:101865800-101866800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr9:101865800-101867000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:101865800-101867000	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr9:101865800-101867000	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr9:101865800-101867000	Flanking Active TSS	HepG2	liver
39	chr9:101865800-101867000	Flanking Active TSS	NHEK	skin
40	chr9:101866000-101866400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:101866000-101866400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
42	chr9:101866000-101866400	Enhancers	Primary B cells from cord blood	blood
43	chr9:101866000-101866400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:101866000-101866400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr9:101866000-101866400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:101866000-101866400	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr9:101866000-101866400	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr9:101866000-101866400	Enhancers	Fetal Heart	heart
49	chr9:101866000-101866400	Enhancers	Fetal Intestine Large	intestine
50	chr9:101866000-101866400	Enhancers	HUVEC	blood vessel

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