Variant report

Variant	rs17711860
Chromosome Location	chr9:101800106-101800107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101797627..101800388-chr9:101810354..101812234,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11568742	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17711860	ANKS6	cis	cerebellum	SCAN
rs17711860	GALNT12	cis	cerebellum	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
5	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
6	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
7	chr9:101791200-101800600	Weak transcription	Brain Germinal Matrix	brain
8	chr9:101793400-101802000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:101793600-101800400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:101793600-101802000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
12	chr9:101794000-101801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:101795400-101803200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr9:101795800-101803200	Strong transcription	Adipose Nuclei	Adipose
15	chr9:101796000-101800200	Strong transcription	Fetal Stomach	stomach
16	chr9:101796000-101802000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:101796200-101806400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr9:101796600-101801800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:101797200-101800600	Genic enhancers	Placenta	Placenta
20	chr9:101797400-101801200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:101797800-101800200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:101797800-101802000	Weak transcription	Left Ventricle	heart
23	chr9:101798200-101801600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:101798200-101801800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr9:101798200-101803200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:101798400-101803200	Weak transcription	Primary T cells from cord blood	blood
28	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:101798800-101800200	Strong transcription	Rectal Smooth Muscle	rectum
30	chr9:101798800-101803200	Weak transcription	Thymus	Thymus
31	chr9:101799000-101802800	Enhancers	Fetal Brain Male	brain
32	chr9:101799000-101804600	Enhancers	HSMM	muscle
33	chr9:101799200-101800200	Enhancers	Fetal Brain Female	brain
34	chr9:101799200-101801800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:101799200-101802000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:101799200-101803200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
38	chr9:101799400-101804000	Genic enhancers	Fetal Muscle Leg	muscle
39	chr9:101799400-101804200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:101799400-101805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:101799600-101803200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:101799800-101801200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:101799800-101802000	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:101799800-101802000	Enhancers	NHDF-Ad	bronchial
45	chr9:101800000-101800200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:101800000-101800200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:101800000-101800400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:101800000-101801200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
49	chr9:101800000-101801400	Flanking Active TSS	HSMMtube	muscle
50	chr9:101800000-101802800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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