Variant report

Variant	nsv466442
Chromosome Location	chr9:101788522-101816399
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:223)
CpG islands
(count:61)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:223 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:101812494-101812690	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:101812581-101812669	K562	blood:	n/a	n/a
3	ATF1	chr9:101813781-101813886	K562	blood:	n/a	n/a
4	ATF1	chr9:101793657-101793979	K562	blood:	n/a	n/a
5	BHLHE40	chr9:101812557-101812760	K562	blood:	n/a	n/a
6	CBX3	chr9:101793596-101793985	K562	blood:	n/a	n/a
7	CBX3	chr9:101807111-101807482	K562	blood:	n/a	n/a
8	CEBPB	chr9:101792413-101792613	HepG2	liver:	n/a	chr9:101792536-101792547 chr9:101792536-101792549
9	CEBPB	chr9:101792448-101792542	K562	blood:	n/a	n/a
10	CEBPB	chr9:101792231-101793205	IMR90	lung:	n/a	chr9:101792536-101792547 chr9:101793158-101793166 chr9:101792536-101792549 chr9:101792395-101792408
11	CEBPB	chr9:101792324-101792665	A549	lung:	n/a	chr9:101792536-101792547 chr9:101792536-101792549 chr9:101792395-101792408
12	CEBPB	chr9:101803443-101803852	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr9:101792207-101793337	Hela-S3	cervix:	n/a	chr9:101792536-101792547 chr9:101793158-101793166 chr9:101792536-101792549 chr9:101792395-101792408
14	CEBPB	chr9:101803473-101803834	IMR90	lung:	n/a	n/a
15	CEBPB	chr9:101807275-101807474	IMR90	lung:	n/a	n/a
16	CHD2	chr9:101797722-101797796	GM12878	blood:	n/a	n/a
17	CHD2	chr9:101792328-101792848	Hela-S3	cervix:	n/a	n/a
18	CHD2	chr9:101803597-101803871	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr9:101788460-101788610	GM12866	blood:	n/a	n/a
20	CTCF	chr9:101789311-101789407	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr9:101788420-101788570	WERI-Rb-1	eye:	n/a	n/a
22	CTCF	chr9:101788400-101788550	GM12874	blood:	n/a	n/a
23	CTCF	chr9:101789220-101789370	HBMEC	blood vessel:	n/a	n/a
24	CTCF	chr9:101789240-101789390	AG04450	lung:	n/a	n/a
25	CTCF	chr9:101788440-101788590	NHEK	skin:	n/a	n/a
26	CTCF	chr9:101789316-101789397	Hela-S3	cervix:	n/a	n/a
27	CTCF	chr9:101807286-101807390	K562	blood:	n/a	n/a
28	CTCF	chr9:101807280-101807430	HAc	cerebellar:	n/a	n/a
29	CTCF	chr9:101789240-101789390	HEK293	kidney:	n/a	n/a
30	CTCF	chr9:101789240-101789390	HCPEpiC	choroid plexus:	n/a	n/a
31	CTCF	chr9:101815420-101815570	NB4	blood:	n/a	chr9:101815420-101815428
32	CTCF	chr9:101789260-101789410	AG04450	lung:	n/a	n/a
33	CTCF	chr9:101788380-101788530	GM12870	blood:	n/a	n/a
34	CTCF	chr9:101788407-101788525	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr9:101789300-101789450	HMEC	breast:	n/a	n/a
36	CTCF	chr9:101788400-101788550	GM12865	blood:	n/a	n/a
37	CTCF	chr9:101789240-101789390	NHEK	skin:	n/a	n/a
38	CTCF	chr9:101789160-101789310	HPAF	blood vessel:	n/a	n/a
39	CTCF	chr9:101789200-101789350	HFF	foreskin:	n/a	n/a
40	CTCF	chr9:101788380-101788530	HepG2	liver:	n/a	n/a
41	CTCF	chr9:101788400-101788550	HPAF	blood vessel:	n/a	n/a
42	CTCF	chr9:101788380-101788530	RPTEC	kidney:	n/a	n/a
43	CTCF	chr9:101789191-101789490	K562	blood:	n/a	n/a
44	CTCF	chr9:101789200-101789350	AoAF	blood vessel:	n/a	n/a
45	CTCF	chr9:101788361-101788541	H1-hESC	embryonic stem cell:	n/a	chr9:101788365-101788374
46	CTCF	chr9:101788400-101788550	GM06990	blood:	n/a	n/a
47	CTCF	chr9:101789320-101789470	HCPEpiC	choroid plexus:	n/a	n/a
48	CTCF	chr9:101811980-101812130	K562	blood:	n/a	n/a
49	CTCF	chr9:101788380-101788530	HCT-116	colon:	n/a	n/a
50	CTCF	chr9:101788400-101788550	GM12871	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:101809008-101809058	HCM	heart:	n/a
2	chr9:101809008-101809058	HIPEpiC	eye:	n/a
3	chr9:101809008-101809058	HCF	heart:	n/a
4	chr9:101809008-101809058	HRE	kidney:	n/a
5	chr9:101809008-101809058	MCF-7	breast:	n/a
6	chr9:101809008-101809058	HEEpiC	esophagus:	n/a
7	chr9:101809008-101809058	NH-A	brain:	n/a
8	chr9:101809008-101809058	PrEC	prostate:	n/a
9	chr9:101809008-101809058	AG04450	lung:	fetal
10	chr9:101809008-101809058	Hepatocyte	liver:	n/a
11	chr9:101809008-101809058	HepG2	liver:	n/a
12	chr9:101809008-101809058	ECC-1	luminal epithelium:	n/a
13	chr9:101809008-101809058	SAEC	small airway:	n/a
14	chr9:101809008-101809058	MCF10A-Er-Src	breast:	n/a
15	chr9:101809008-101809058	GM12891	blood:	n/a
16	chr9:101809008-101809058	ProgFib	skin:	n/a
17	chr9:101809008-101809058	H1-hESC	embryonic stem cell:	embryo
18	chr9:101809008-101809058	AoSMC	blood vessel:	n/a
19	chr9:101809008-101809058	Hela-S3	cervix:	n/a
20	chr9:101809008-101809058	GM12878	blood:	n/a
21	chr9:101809008-101809058	CMK	blood:	n/a
22	chr9:101809008-101809058	NHBE	bronchial:	n/a
23	chr9:101809008-101809058	HAEpiC	amniotic membrane:	n/a
24	chr9:101809008-101809058	GM06990	blood:	n/a
25	chr9:101809008-101809058	PANC-1	pancreas:	n/a
26	chr9:101809008-101809058	HCPEpiC	choroid plexus:	n/a
27	chr9:101809008-101809058	K562	blood:	n/a
28	chr9:101809008-101809058	GM19239	blood:	n/a
29	chr9:101809008-101809058	AG09319	gingival:	n/a
30	chr9:101809008-101809058	HUVEC	blood vessel:	n/a
31	chr9:101809008-101809058	SK-N-MC	brain:	n/a
32	chr9:101809008-101809058	A549	lung:	n/a
33	chr9:101809008-101809058	HMEC	breast:	n/a
34	chr9:101809008-101809058	IMR90	lung:	fetal
35	chr9:101809008-101809058	U87	brain:	n/a
36	chr9:101809008-101809058	SKMC	muscle:	n/a
37	chr9:101809008-101809058	HEK293	kidney:	embryo
38	chr9:101809008-101809058	NT2-D1	testis:	n/a
39	chr9:101809008-101809058	BJ	skin:	n/a
40	chr9:101809008-101809058	AG04449	skin:	fetal
41	chr9:101809008-101809058	ovcar-3	ovarian:	n/a
42	chr9:101809008-101809058	BE2_C	brain:	n/a
43	chr9:101809008-101809058	HRPEpiC	eye:	n/a
44	chr9:101809008-101809058	NB4	blood:	n/a
45	chr9:101809008-101809058	SK-N-SH	brain:	n/a
46	chr9:101809008-101809058	Jurkat	blood:	n/a
47	chr9:101809008-101809058	RPTEC	kidney:	n/a
48	chr9:101809008-101809058	AG09309	skin:	n/a
49	chr9:101809008-101809058	AG10803	skin:	n/a
50	chr9:101809008-101809058	HNPCEpiC	eye:	n/a

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
2	chr9:101789435..101791807-chr9:101823952..101826363,2	K562	blood:
3	chr9:101705553..101708180-chr9:101788148..101790711,2	K562	blood:
4	chr9:101815426..101817191-chr9:101905966..101908398,2	K562	blood:
5	chr9:101781442..101783754-chr9:101790736..101792592,2	MCF-7	breast:
6	chr9:101801421..101804201-chr9:101810789..101812954,3	K562	blood:
7	chr9:101801421..101804201-chr9:101810789..101812954,3	K562	blood:
8	chr9:101794480..101796819-chr9:101798341..101801832,3	K562	blood:
9	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:
10	chr9:101797627..101800388-chr9:101810354..101812234,3	K562	blood:
11	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
12	chr9:101793999..101795720-chr9:101833951..101836839,3	K562	blood:
13	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:
14	chr9:101786925..101789354-chr9:101811667..101813513,2	K562	blood:
15	chr9:101786925..101789354-chr9:101811667..101813513,2	K562	blood:
16	chr9:101796547..101799706-chr9:101804532..101807252,3	K562	blood:
17	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
18	chr9:101792664..101795023-chr9:101864958..101868236,3	MCF-7	breast:
19	chr9:101775654..101777747-chr9:101787081..101788850,2	K562	blood:
20	chr9:101803071..101805545-chr9:101877080..101878888,2	K562	blood:
21	chr9:101793999..101795600-chr9:101833951..101836839,3	K562	blood:
22	chr9:101783791..101786672-chr9:101794290..101796962,2	K562	blood:
23	chr9:101796547..101799706-chr9:101804532..101807252,3	K562	blood:
24	chr9:101796608..101798639-chr9:101799341..101801100,2	MCF-7	breast:
25	chr9:101783186..101785549-chr9:101797018..101799423,2	K562	blood:
26	chr9:101788010..101791486-chr9:101836576..101838981,4	K562	blood:
27	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:
28	chr9:101796973..101799008-chr9:101865020..101867794,2	MCF-7	breast:
29	chr9:101797627..101800388-chr9:101810354..101812234,3	K562	blood:
30	chr9:101796455..101798562-chr9:101836494..101838693,2	K562	blood:

No data

Variant related genes	Relation type
COL15A1	TF binding region
COL15A1	CpG island
ENSG00000270412	chromatin interactions
ENSG00000204291	chromatin interactions
ENSG00000252942	chromatin interactions
ENSG00000106799	chromatin interactions

Extended variants
information (count: 1175 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:1175 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2297602	chr9:101788522-101788523	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs542566964	chr9:101788557-101788558	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs184759041	chr9:101788565-101788566	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs547829401	chr9:101788620-101788621	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs568092659	chr9:101788627-101788628	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs536937134	chr9:101788639-101788640	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs550927608	chr9:101788647-101788648	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs570637955	chr9:101788664-101788665	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs189144136	chr9:101788688-101788689	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs376218195	chr9:101788771-101788772	Enhancers Genic enhancers Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs181480366	chr9:101788825-101788826	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs573213399	chr9:101788837-101788838	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs184933695	chr9:101788846-101788847	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs114711752	chr9:101788866-101788867	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs575630444	chr9:101788901-101788902	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs544483883	chr9:101788911-101788912	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs558005124	chr9:101788962-101788963	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs189647085	chr9:101788966-101788967	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs376513026	chr9:101788984-101788985	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs528095066	chr9:101789006-101789007	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs182362701	chr9:101789009-101789010	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs141608664	chr9:101789089-101789090	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs186096243	chr9:101789124-101789125	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs528172002	chr9:101789174-101789175	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs150697519	chr9:101789205-101789206	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs540017987	chr9:101789252-101789253	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs536687989	chr9:101789268-101789269	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs556521977	chr9:101789276-101789277	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs115294623	chr9:101789283-101789284	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs550757172	chr9:101789302-101789303	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs565694724	chr9:101789308-101789309	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs550617724	chr9:101789324-101789325	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs570722466	chr9:101789325-101789326	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs369645292	chr9:101789344-101789345	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs370920371	chr9:101789359-101789360	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs533272833	chr9:101789370-101789371	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs546768481	chr9:101789382-101789383	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs190948900	chr9:101789415-101789416	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs140996740	chr9:101789423-101789424	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs555860188	chr9:101789478-101789479	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs181353634	chr9:101789482-101789483	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs548606207	chr9:101789485-101789486	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs78858333	chr9:101789508-101789509	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs73653731	chr9:101789540-101789541	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs540572921	chr9:101789565-101789566	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs77759646	chr9:101789573-101789574	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs574210111	chr9:101789600-101789601	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs541538202	chr9:101789623-101789624	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs114465776	chr9:101789630-101789631	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs530635219	chr9:101789656-101789657	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:639 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
4	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
5	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
8	chr9:101785600-101789000	Weak transcription	Fetal Thymus	thymus
9	chr9:101786000-101788800	Weak transcription	Thymus	Thymus
10	chr9:101786400-101788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:101786400-101788600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:101786400-101788600	Weak transcription	Brain Anterior Caudate	brain
13	chr9:101786400-101788600	Weak transcription	NHDF-Ad	bronchial
14	chr9:101786400-101788800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:101786400-101788800	Strong transcription	Fetal Stomach	stomach
16	chr9:101786400-101789200	Strong transcription	Colon Smooth Muscle	Colon
17	chr9:101786400-101790600	Strong transcription	Stomach Smooth Muscle	stomach
18	chr9:101786400-101791200	Weak transcription	Osteobl	bone
19	chr9:101786400-101791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:101786400-101791400	Weak transcription	HSMM	muscle
21	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:101786600-101791400	Weak transcription	NH-A	brain
23	chr9:101786600-101791600	Strong transcription	Adipose Nuclei	Adipose
24	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
26	chr9:101786800-101790600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:101787000-101788800	Weak transcription	Primary T cells from cord blood	blood
28	chr9:101787200-101806400	Weak transcription	Ovary	ovary
29	chr9:101787400-101788600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:101787400-101790000	Strong transcription	HSMMtube	muscle
31	chr9:101787600-101789400	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:101787600-101791200	Weak transcription	NHLF	lung
33	chr9:101787800-101790400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101787800-101792200	Weak transcription	Hela-S3	cervix
35	chr9:101788000-101788800	Strong transcription	Pancreas	Pancrea
36	chr9:101788000-101789000	Strong transcription	Esophagus	oesophagus
37	chr9:101788000-101789000	Strong transcription	Rectal Smooth Muscle	rectum
38	chr9:101788000-101789200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:101788000-101790000	Strong transcription	Left Ventricle	heart
40	chr9:101788000-101790400	Genic enhancers	Placenta	Placenta
41	chr9:101788200-101788800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:101788200-101789200	Strong transcription	Right Ventricle	heart
43	chr9:101788200-101790000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
45	chr9:101788400-101790400	Enhancers	K562	blood
46	chr9:101788600-101788800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:101788600-101789000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:101788600-101789000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:101788600-101789200	Enhancers	Brain Anterior Caudate	brain
50	chr9:101788600-101789400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links