Variant report

Variant	rs189647085
Chromosome Location	chr9:101788966-101788967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101788010..101791486-chr9:101836576..101838981,4	K562	blood:
2	chr9:101705553..101708180-chr9:101788148..101790711,2	K562	blood:
3	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:
4	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
5	chr9:101786925..101789354-chr9:101811667..101813513,2	K562	blood:
6	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270412	Chromatin interaction
ENSG00000204291	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
4	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
5	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
7	chr9:101785600-101789000	Weak transcription	Fetal Thymus	thymus
8	chr9:101786400-101789200	Strong transcription	Colon Smooth Muscle	Colon
9	chr9:101786400-101790600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr9:101786400-101791200	Weak transcription	Osteobl	bone
11	chr9:101786400-101791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:101786400-101791400	Weak transcription	HSMM	muscle
13	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:101786600-101791400	Weak transcription	NH-A	brain
15	chr9:101786600-101791600	Strong transcription	Adipose Nuclei	Adipose
16	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
18	chr9:101786800-101790600	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:101787200-101806400	Weak transcription	Ovary	ovary
20	chr9:101787400-101790000	Strong transcription	HSMMtube	muscle
21	chr9:101787600-101789400	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:101787600-101791200	Weak transcription	NHLF	lung
23	chr9:101787800-101790400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:101787800-101792200	Weak transcription	Hela-S3	cervix
25	chr9:101788000-101789000	Strong transcription	Esophagus	oesophagus
26	chr9:101788000-101789000	Strong transcription	Rectal Smooth Muscle	rectum
27	chr9:101788000-101789200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:101788000-101790000	Strong transcription	Left Ventricle	heart
29	chr9:101788000-101790400	Genic enhancers	Placenta	Placenta
30	chr9:101788200-101789200	Strong transcription	Right Ventricle	heart
31	chr9:101788200-101790000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
33	chr9:101788400-101790400	Enhancers	K562	blood
34	chr9:101788600-101789000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:101788600-101789000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:101788600-101789200	Enhancers	Brain Anterior Caudate	brain
37	chr9:101788600-101789400	Enhancers	NHDF-Ad	bronchial
38	chr9:101788600-101790400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr9:101788600-101790400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr9:101788800-101789200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:101788800-101789400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:101788800-101789400	Enhancers	Thymus	Thymus
43	chr9:101788800-101789600	Genic enhancers	Fetal Stomach	stomach
44	chr9:101788800-101790200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:101788800-101790400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr9:101788800-101790400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr9:101788800-101790400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr9:101788800-101790400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr9:101788800-101790600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr9:101788800-101790800	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links