Variant report

Variant	rs184759041
Chromosome Location	chr9:101788565-101788566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101775654..101777747-chr9:101787081..101788850,2	K562	blood:
2	chr9:101788010..101791486-chr9:101836576..101838981,4	K562	blood:
3	chr9:101705553..101708180-chr9:101788148..101790711,2	K562	blood:
4	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
5	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:
6	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
7	chr9:101786925..101789354-chr9:101811667..101813513,2	K562	blood:
8	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270412	Chromatin interaction
ENSG00000204291	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
4	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
5	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
8	chr9:101785600-101789000	Weak transcription	Fetal Thymus	thymus
9	chr9:101786000-101788800	Weak transcription	Thymus	Thymus
10	chr9:101786400-101788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:101786400-101788600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:101786400-101788600	Weak transcription	Brain Anterior Caudate	brain
13	chr9:101786400-101788600	Weak transcription	NHDF-Ad	bronchial
14	chr9:101786400-101788800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:101786400-101788800	Strong transcription	Fetal Stomach	stomach
16	chr9:101786400-101789200	Strong transcription	Colon Smooth Muscle	Colon
17	chr9:101786400-101790600	Strong transcription	Stomach Smooth Muscle	stomach
18	chr9:101786400-101791200	Weak transcription	Osteobl	bone
19	chr9:101786400-101791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:101786400-101791400	Weak transcription	HSMM	muscle
21	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:101786600-101791400	Weak transcription	NH-A	brain
23	chr9:101786600-101791600	Strong transcription	Adipose Nuclei	Adipose
24	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
26	chr9:101786800-101790600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:101787000-101788800	Weak transcription	Primary T cells from cord blood	blood
28	chr9:101787200-101806400	Weak transcription	Ovary	ovary
29	chr9:101787400-101788600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:101787400-101790000	Strong transcription	HSMMtube	muscle
31	chr9:101787600-101789400	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:101787600-101791200	Weak transcription	NHLF	lung
33	chr9:101787800-101790400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101787800-101792200	Weak transcription	Hela-S3	cervix
35	chr9:101788000-101788800	Strong transcription	Pancreas	Pancrea
36	chr9:101788000-101789000	Strong transcription	Esophagus	oesophagus
37	chr9:101788000-101789000	Strong transcription	Rectal Smooth Muscle	rectum
38	chr9:101788000-101789200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:101788000-101790000	Strong transcription	Left Ventricle	heart
40	chr9:101788000-101790400	Genic enhancers	Placenta	Placenta
41	chr9:101788200-101788800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:101788200-101789200	Strong transcription	Right Ventricle	heart
43	chr9:101788200-101790000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
45	chr9:101788400-101790400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links