Variant report

Variant	rs11568796
Chromosome Location	chr9:101907484-101907485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101901991..101903988-chr9:101906296..101908227,2	MCF-7	breast:
2	chr9:101906079..101907855-chr9:101915148..101917814,2	K562	blood:
3	chr9:101866534..101869508-chr9:101907295..101910821,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10988715	1.00[YRI][hapmap]
rs11568749	1.00[YRI][hapmap]
rs11568791	1.00[AFR][1000 genomes]
rs11568794	1.00[AFR][1000 genomes]
rs11568802	1.00[AFR][1000 genomes]
rs11568806	1.00[AFR][1000 genomes]
rs11568808	1.00[AFR][1000 genomes]
rs11568812	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
3	chr9:101890200-101907600	Weak transcription	Gastric	stomach
4	chr9:101890400-101908400	Weak transcription	Hela-S3	cervix
5	chr9:101890600-101908800	Weak transcription	Right Ventricle	heart
6	chr9:101892600-101914200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:101894200-101907600	Weak transcription	HUVEC	blood vessel
9	chr9:101895000-101914200	Weak transcription	Esophagus	oesophagus
10	chr9:101897600-101913400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:101897600-101915400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:101898000-101912200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101898000-101919400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:101899000-101913000	Strong transcription	HSMM	muscle
15	chr9:101899400-101908000	Weak transcription	Colonic Mucosa	Colon
16	chr9:101899400-101913000	Weak transcription	Thymus	Thymus
17	chr9:101900200-101914800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr9:101900200-101915200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:101900800-101916800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr9:101901200-101908000	Weak transcription	Psoas Muscle	Psoas
21	chr9:101901800-101912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:101902200-101911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:101902800-101914200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:101902800-101915400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr9:101903000-101911000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:101903000-101911800	Strong transcription	Fetal Muscle Leg	muscle
27	chr9:101903000-101915200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr9:101903000-101921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr9:101903200-101910400	Strong transcription	K562	blood
30	chr9:101903200-101911000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:101903200-101912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:101903200-101912000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:101903200-101912600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:101903200-101913200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr9:101903200-101915000	Strong transcription	Osteobl	bone
36	chr9:101903400-101911400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:101903400-101911400	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:101903400-101914200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:101903400-101915400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:101903600-101908800	Strong transcription	Primary T cells from cord blood	blood
41	chr9:101903600-101909400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:101903600-101910800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr9:101903600-101911000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:101903600-101911400	Strong transcription	Dnd41	blood
45	chr9:101903600-101912200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:101903600-101915000	Strong transcription	HSMMtube	muscle
47	chr9:101903600-101915200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:101903800-101909800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:101903800-101911400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:101903800-101911600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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