Variant report

Variant	rs11569050
Chromosome Location	chr4:110909702-110909703
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11569042	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs11569105	1.00[CEU][hapmap]
rs11569115	1.00[CEU][hapmap]
rs17008352	1.00[CEU][hapmap]
rs6830168	1.00[CEU][hapmap]
rs6855330	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
2	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
3	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
5	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:110902200-110910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:110902800-110910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:110903200-110911400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:110906800-110920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
12	chr4:110907800-110927400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:110908600-110916200	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:110909400-110910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:110909600-110910000	Enhancers	Duodenum Mucosa	Duodenum
16	chr4:110909600-110910200	Enhancers	Esophagus	oesophagus
17	chr4:110909600-110910200	Enhancers	Fetal Intestine Small	intestine
18	chr4:110909600-110910400	Enhancers	Hela-S3	cervix
19	chr4:110909600-110910400	Flanking Active TSS	NHEK	skin
20	chr4:110909600-110910600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:110909600-110910800	Enhancers	Fetal Heart	heart
22	chr4:110909600-110911200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr4:110909600-110912000	Enhancers	HMEC	breast
24	chr4:110909600-110913800	Enhancers	Primary monocytes fromperipheralblood	blood

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