Variant report

Variant	rs6855330
Chromosome Location	chr4:110801520-110801521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11569042	1.00[CEU][hapmap]
rs11569050	1.00[CEU][hapmap]
rs11569105	1.00[CEU][hapmap]
rs11569115	1.00[CEU][hapmap]
rs13152659	1.00[AMR][1000 genomes]
rs16997098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008352	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4698791	1.00[AMR][1000 genomes]
rs4698793	1.00[AMR][1000 genomes]
rs6533454	1.00[AMR][1000 genomes]
rs6533466	1.00[AMR][1000 genomes]
rs6823460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823468	1.00[AMR][1000 genomes]
rs6830168	1.00[CEU][hapmap]
rs6847144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6850937	1.00[AMR][1000 genomes]
rs6851274	1.00[AMR][1000 genomes]
rs7442505	1.00[AMR][1000 genomes]
rs7675451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110799600-110801800	Enhancers	Pancreas	Pancrea
2	chr4:110799600-110802000	Enhancers	Placenta	Placenta
3	chr4:110800200-110801600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:110800200-110802400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr4:110800400-110801600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110800400-110807600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110800600-110807400	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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