Variant report

Variant	rs11569173
Chromosome Location	chr3:141747089-141747090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141746024..141748965-chr3:160116774..160118286,2	K562	blood:
2	chr3:141746397..141747918-chr3:142295641..142297892,2	K562	blood:

Variant related genes	Relation type
ENSG00000113810	Chromatin interaction
ENSG00000175054	Chromatin interaction
ENSG00000068885	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7617284	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877554	chr3:141735532-141781890	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv877555	chr3:141740076-141791408	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141733600-141747200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:141739200-141747200	Weak transcription	Small Intestine	intestine
3	chr3:141744000-141747800	Active TSS	Thymus	Thymus
4	chr3:141744800-141748200	Active TSS	K562	blood
5	chr3:141745000-141747600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:141745200-141747800	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr3:141745200-141747800	Active TSS	Fetal Thymus	thymus
8	chr3:141745200-141748000	Active TSS	GM12878-XiMat	blood
9	chr3:141745400-141747600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:141745400-141747600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:141745400-141747600	Active TSS	Stomach Smooth Muscle	stomach
12	chr3:141745600-141747400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:141745600-141747600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:141745600-141747600	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr3:141745600-141747600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:141745600-141747600	Active TSS	Brain Germinal Matrix	brain
17	chr3:141745600-141747600	Active TSS	Fetal Brain Female	brain
18	chr3:141745600-141747600	Active TSS	HSMMtube	muscle
19	chr3:141745600-141747800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:141745800-141747400	Active TSS	Fetal Kidney	kidney
21	chr3:141745800-141747400	Active TSS	Dnd41	blood
22	chr3:141745800-141747600	Active TSS	H1 Cell Line	embryonic stem cell
23	chr3:141745800-141747600	Active TSS	Duodenum Mucosa	Duodenum
24	chr3:141745800-141747600	Active TSS	Fetal Stomach	stomach
25	chr3:141746000-141747600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:141746000-141747600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr3:141746000-141747600	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr3:141746000-141747600	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr3:141746000-141747600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:141746000-141747600	Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr3:141746000-141747600	Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr3:141746000-141747600	Active TSS	Fetal Muscle Leg	muscle
33	chr3:141746000-141747600	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr3:141746000-141747800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:141746000-141748000	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr3:141746200-141747400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:141746200-141747400	Active TSS	Colonic Mucosa	Colon
38	chr3:141746200-141747600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr3:141746200-141747600	Active TSS	H9 Cell Line	embryonic stem cell
40	chr3:141746200-141747600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:141746200-141747600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:141746200-141747600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:141746200-141747600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:141746200-141747600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr3:141746200-141747600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:141746200-141747600	Active TSS	Muscle Satellite Cultured Cells	--
47	chr3:141746200-141747600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:141746200-141747600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:141746200-141747600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:141746200-141747600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links