Variant report

Variant	rs11569287
Chromosome Location	chr3:141671892-141671893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141632396..141635066-chr3:141671620..141673912,2	K562	blood:
2	chr3:141653317..141655393-chr3:141670324..141672053,2	MCF-7	breast:
3	chr3:141665440..141667563-chr3:141670858..141673454,2	K562	blood:

Variant related genes	Relation type
ENSG00000269905	Chromatin interaction
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11569280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569294	1.00[AMR][1000 genomes]
rs60029878	1.00[AMR][1000 genomes]
rs72988270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141628200-141673600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:141628800-141674000	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
4	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:141643000-141675800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:141644800-141678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:141659400-141673800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:141659400-141678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:141659600-141674000	Weak transcription	NHLF	lung
11	chr3:141659600-141676000	Weak transcription	Fetal Heart	heart
12	chr3:141659600-141676400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:141659600-141678200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:141659600-141678200	Weak transcription	NHDF-Ad	bronchial
15	chr3:141659600-141678400	Weak transcription	A549	lung
16	chr3:141660000-141673800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:141660000-141674200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:141663400-141672200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:141663400-141674000	Weak transcription	Ovary	ovary
21	chr3:141664200-141672400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:141664200-141672600	Strong transcription	Thymus	Thymus
23	chr3:141664600-141674200	Weak transcription	Esophagus	oesophagus
24	chr3:141665200-141674000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:141666400-141672400	Strong transcription	Fetal Stomach	stomach
27	chr3:141666400-141687200	Strong transcription	Dnd41	blood
28	chr3:141667000-141685600	Weak transcription	Brain Substantia Nigra	brain
29	chr3:141668000-141672000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:141668200-141672000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:141668200-141672200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:141668200-141672400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:141668400-141672000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr3:141668400-141672000	Strong transcription	GM12878-XiMat	blood
36	chr3:141668400-141672400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:141668400-141672400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:141668400-141672400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:141668600-141672200	Strong transcription	Primary T cells from cord blood	blood
40	chr3:141668600-141672400	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr3:141668600-141678400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:141668800-141672000	Strong transcription	Fetal Muscle Leg	muscle
44	chr3:141668800-141672400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr3:141668800-141674000	Strong transcription	Fetal Thymus	thymus
46	chr3:141669000-141672000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:141669000-141672000	Strong transcription	Liver	Liver
48	chr3:141669200-141672200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:141669400-141672000	Strong transcription	Primary B cells from cord blood	blood
50	chr3:141669400-141672200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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