Variant report

Variant	rs11570176
Chromosome Location	chr11:57529429-57529430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:329)
CpG islands
(count:122)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:329 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:57529103-57529569	GM12891	blood:	n/a	n/a
2	POLR2A	chr11:57529142-57529579	GM12878	blood:	n/a	n/a
3	NFYB	chr11:57529053-57529462	Hela-S3	cervix:	n/a	chr11:57529175-57529190
4	HDAC2	chr11:57529098-57529468	HepG2	liver:	n/a	chr11:57529135-57529149
5	KAT2A	chr11:57529217-57529482	GM12878	blood:	n/a	n/a
6	STAT3	chr11:57529114-57529757	MCF10A-Er-Src	breast:	n/a	chr11:57529547-57529558
7	POLR2A	chr11:57528801-57529669	H1-neurons	neurons:	n/a	n/a
8	EP300	chr11:57529109-57529477	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr11:57529131-57529630	Hela-S3	cervix:	n/a	n/a
10	SP1	chr11:57528742-57529668	HCT-116	colon:	n/a	chr11:57529255-57529269
11	SRF	chr11:57528926-57529746	HCT-116	colon:	n/a	chr11:57529323-57529336 chr11:57529321-57529339
12	CHD1	chr11:57529186-57530254	GM12878	blood:	n/a	n/a
13	POLR2A	chr11:57529162-57529633	K562	blood:	n/a	n/a
14	NFYB	chr11:57528916-57529564	GM12878	blood:	n/a	chr11:57529175-57529190
15	TCF12	chr11:57528711-57529766	A549	lung:	n/a	n/a
16	IRF1	chr11:57529166-57529560	K562	blood:	n/a	chr11:57529249-57529266
17	YY1	chr11:57529146-57529607	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr11:57528810-57529636	IMR90	lung:	n/a	n/a
19	POLR2A	chr11:57529152-57529562	K562	blood:	n/a	n/a
20	REST	chr11:57529111-57529660	H1-neurons	neurons:	n/a	chr11:57529454-57529462 chr11:57529452-57529472 chr11:57529452-57529466
21	HEY1	chr11:57529097-57529572	K562	blood:	n/a	n/a
22	POLR2A	chr11:57529113-57529616	K562	blood:	n/a	n/a
23	MAX	chr11:57529081-57529665	A549	lung:	n/a	n/a
24	GTF2B	chr11:57529147-57529509	K562	blood:	n/a	n/a
25	MAX	chr11:57529109-57529613	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr11:57529052-57529573	K562	blood:	n/a	n/a
27	POLR2A	chr11:57529125-57529647	GM12878	blood:	n/a	n/a
28	MAFF	chr11:57529211-57529667	K562	blood:	n/a	n/a
29	JUN	chr11:57528647-57530470	K562	blood:	n/a	n/a
30	YY1	chr11:57529129-57529468	HepG2	liver:	n/a	n/a
31	TCF7L2	chr11:57528893-57529533	Hela-S3	cervix:	n/a	chr11:57528956-57528972 chr11:57528956-57528972
32	TAF1	chr11:57529133-57529570	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr11:57528968-57529701	K562	blood:	n/a	n/a
34	TAF1	chr11:57528992-57529769	A549	lung:	n/a	n/a
35	POLR2A	chr11:57529124-57529533	HepG2	liver:	n/a	n/a
36	POLR2A	chr11:57529153-57529643	GM12892	blood:	n/a	n/a
37	MAX	chr11:57529144-57529566	ECC-1	luminal epithelium:	n/a	n/a
38	CHD2	chr11:57528850-57529552	GM12878	blood:	n/a	n/a
39	CREB1	chr11:57528961-57529696	GM12878	blood:	n/a	n/a
40	CHD1	chr11:57529176-57531763	H1-hESC	embryonic stem cell:	n/a	n/a
41	MYBL2	chr11:57529007-57529673	HepG2	liver:	n/a	n/a
42	YY1	chr11:57529155-57529468	HCT-116	colon:	n/a	n/a
43	SP1	chr11:57528867-57529749	HCT-116	colon:	n/a	chr11:57529255-57529269
44	POLR2A	chr11:57528957-57529571	HEK293	kidney:	n/a	n/a
45	IRF1	chr11:57528888-57529692	K562	blood:	n/a	chr11:57529249-57529266
46	GTF2F1	chr11:57529114-57529579	Hela-S3	cervix:	n/a	n/a
47	TAF1	chr11:57529177-57529531	HepG2	liver:	n/a	n/a
48	ZMIZ1	chr11:57528872-57529598	K562	blood:	n/a	n/a
49	REST	chr11:57529145-57529526	HepG2	liver:	n/a	chr11:57529454-57529462 chr11:57529452-57529472 chr11:57529452-57529466
50	CEBPB	chr11:57529130-57529474	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:57529419-57529469	HMEC	breast:	n/a
2	chr11:57529400-57529450	NB4	blood:	n/a
3	chr11:57529400-57529450	HAEpiC	amniotic membrane:	n/a
4	chr11:57529419-57529469	AG04449	skin:	fetal
5	chr11:57529400-57529450	CMK	blood:	n/a
6	chr11:57529419-57529469	SKMC	muscle:	n/a
7	chr11:57529419-57529469	CMK	blood:	n/a
8	chr11:57529419-57529469	SK-N-MC	brain:	n/a
9	chr11:57529419-57529469	GM06990	blood:	n/a
10	chr11:57529400-57529450	Hepatocyte	liver:	n/a
11	chr11:57529400-57529450	HUVEC	blood vessel:	n/a
12	chr11:57529419-57529469	NHDF-neo	bronchial:	n/a
13	chr11:57529419-57529469	ProgFib	skin:	n/a
14	chr11:57529419-57529469	GM12878	blood:	n/a
15	chr11:57529400-57529450	HEK293	kidney:	embryo
16	chr11:57529400-57529450	AG04449	skin:	fetal
17	chr11:57529419-57529469	GM12892	blood:	n/a
18	chr11:57529400-57529450	HCM	heart:	n/a
19	chr11:57529419-57529469	HCF	heart:	n/a
20	chr11:57529400-57529450	IMR90	lung:	fetal
21	chr11:57529419-57529469	GM12891	blood:	n/a
22	chr11:57529419-57529469	AoSMC	blood vessel:	n/a
23	chr11:57529419-57529469	Hepatocyte	liver:	n/a
24	chr11:57529419-57529469	T-47D	breast:	n/a
25	chr11:57529400-57529450	SK-N-SH	brain:	n/a
26	chr11:57529400-57529450	SK-N-MC	brain:	n/a
27	chr11:57529400-57529450	MCF-7	breast:	n/a
28	chr11:57529400-57529450	Hela-S3	cervix:	n/a
29	chr11:57529419-57529469	Jurkat	blood:	n/a
30	chr11:57529400-57529450	AoSMC	blood vessel:	n/a
31	chr11:57529419-57529469	BE2_C	brain:	n/a
32	chr11:57529419-57529469	HepG2	liver:	n/a
33	chr11:57529419-57529469	HIPEpiC	eye:	n/a
34	chr11:57529419-57529469	GM19239	blood:	n/a
35	chr11:57529419-57529469	HRE	kidney:	n/a
36	chr11:57529400-57529450	SAEC	small airway:	n/a
37	chr11:57529400-57529450	RPTEC	kidney:	n/a
38	chr11:57529400-57529450	K562	blood:	n/a
39	chr11:57529400-57529450	HRCEpiC	kidney:	n/a
40	chr11:57529419-57529469	NHBE	bronchial:	n/a
41	chr11:57529400-57529450	PFSK-1	brain:	n/a
42	chr11:57529400-57529450	HRE	kidney:	n/a
43	chr11:57529419-57529469	HCPEpiC	choroid plexus:	n/a
44	chr11:57529419-57529469	K562	blood:	n/a
45	chr11:57529400-57529450	HCPEpiC	choroid plexus:	n/a
46	chr11:57529419-57529469	MCF-7	breast:	n/a
47	chr11:57529419-57529469	SK-N-SH	brain:	n/a
48	chr11:57529400-57529450	NT2-D1	testis:	n/a
49	chr11:57529419-57529469	HEEpiC	esophagus:	n/a
50	chr11:57529419-57529469	HEK293	kidney:	embryo

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:57528048..57531097-chr11:57548778..57551270,4	MCF-7	breast:
2	chr11:57435166..57438481-chr11:57528814..57531638,3	K562	blood:
3	chr11:57527671..57530404-chr11:57570684..57574039,3	MCF-7	breast:
4	chr11:57507427..57512619-chr11:57528805..57534217,7	K562	blood:
5	chr11:57528372..57531889-chr11:57558761..57560995,3	MCF-7	breast:
6	chr11:57508174..57510185-chr11:57528141..57530575,2	K562	blood:
7	chr11:57527376..57533264-chr11:57564914..57570096,15	MCF-7	breast:
8	chr11:57529135..57533999-chr11:57544009..57550841,10	MCF-7	breast:
9	chr11:57528593..57530299-chr11:57547251..57549415,2	K562	blood:
10	chr11:57527762..57530093-chr11:57547915..57549720,2	K562	blood:

No data

Variant related genes	Relation type
CTNND1	TF binding region
CTNND1	CpG island
ENSG00000156599	Chromatin interaction
ENSG00000198561	Chromatin interaction
ENSG00000211450	Chromatin interaction
ENSG00000254732	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10750870	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792110	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896649	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10896653	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229109	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229119	0.85[AMR][1000 genomes]
rs11570181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270209	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274865	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12363024	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801694	0.84[ASW][hapmap];0.85[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12805343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1424753	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613592	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[ASN][1000 genomes]
rs1624389	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1631684	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1647394	0.82[ASN][1000 genomes]
rs1647403	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17455422	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17455626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783818	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1783824	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1783826	1.00[JPT][hapmap]
rs1783827	1.00[JPT][hapmap]
rs1783828	1.00[JPT][hapmap];0.81[MEX][hapmap]
rs1783976	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783977	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1783978	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783979	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783980	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783981	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783983	0.84[CEU][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs1783985	0.85[ASN][1000 genomes]
rs1785498	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1785499	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1786438	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1798172	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[ASN][1000 genomes]
rs1798173	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[ASN][1000 genomes]
rs1798177	1.00[JPT][hapmap];0.81[MEX][hapmap]
rs2156638	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911728	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2956981	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2956982	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3017889	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36036499	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611222	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471398	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547118	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56392705	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs585337	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs585761	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs588612	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs593239	0.81[ASN][1000 genomes]
rs606499	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs615133	0.85[ASW][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.84[YRI][hapmap]
rs623541	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs627145	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs633129	0.85[ASW][hapmap];0.82[MEX][hapmap];0.84[YRI][hapmap]
rs639158	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs644219	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645145	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs652191	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs652908	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs653889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs658936	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs659165	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs665058	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs666021	0.86[JPT][hapmap]
rs671508	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs682258	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs686489	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7105506	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115528	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7117020	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7120868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479922	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947357	1.00[JPT][hapmap]
rs7948571	0.93[ASN][1000 genomes]
rs929934	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11570176	SLC43A3	cis	cerebellum	SCAN
rs11570176	TIMM10	Cis_1M	lymphoblastoid	RTeQTL
rs11570176	YPEL4	cis	lung	GTEx
rs11570176	TIMM10	cis	parietal	SCAN
rs11570176	ZDHHC5	Cis_1M	lymphoblastoid	RTeQTL
rs11570176	MS4A7	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57513600-57531200	Weak transcription	Gastric	stomach
2	chr11:57514200-57530000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:57528600-57529800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:57528600-57530800	Active TSS	Liver	Liver
5	chr11:57528600-57531200	Active TSS	Adipose Nuclei	Adipose
6	chr11:57528600-57531400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:57528600-57531400	Active TSS	NHEK	skin
8	chr11:57528600-57531600	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:57528600-57531600	Active TSS	GM12878-XiMat	blood
10	chr11:57528600-57531800	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr11:57528600-57531800	Active TSS	NHDF-Ad	bronchial
12	chr11:57528600-57532000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:57528600-57532000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr11:57528600-57532000	Active TSS	Fetal Lung	lung
15	chr11:57528600-57532000	Active TSS	HMEC	breast
16	chr11:57528600-57532200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr11:57528600-57532200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:57528600-57532200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:57528600-57532200	Active TSS	Fetal Stomach	stomach
20	chr11:57528600-57532400	Active TSS	Fetal Brain Female	brain
21	chr11:57528600-57533400	Active TSS	Rectal Smooth Muscle	rectum
22	chr11:57528800-57529800	Active TSS	Primary B cells from cord blood	blood
23	chr11:57528800-57530000	Active TSS	Primary hematopoietic stem cells	blood
24	chr11:57528800-57530400	Active TSS	Pancreas	Pancrea
25	chr11:57528800-57530800	ZNF genes & repeats	Fetal Brain Male	brain
26	chr11:57528800-57531200	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr11:57528800-57531200	Active TSS	Brain Hippocampus Middle	brain
28	chr11:57528800-57531200	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr11:57528800-57531200	Active TSS	Fetal Thymus	thymus
30	chr11:57528800-57531400	Active TSS	Muscle Satellite Cultured Cells	--
31	chr11:57528800-57531600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:57528800-57531600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:57528800-57531600	Active TSS	Psoas Muscle	Psoas
34	chr11:57528800-57531600	Active TSS	Osteobl	bone
35	chr11:57528800-57531800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr11:57528800-57531800	Active TSS	Brain Cingulate Gyrus	brain
37	chr11:57528800-57531800	Active TSS	A549	lung
38	chr11:57528800-57532000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:57528800-57532000	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr11:57528800-57532000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:57528800-57532000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr11:57528800-57532200	Active TSS	H9 Cell Line	embryonic stem cell
43	chr11:57528800-57532200	Active TSS	Duodenum Mucosa	Duodenum
44	chr11:57528800-57532200	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr11:57528800-57532200	Active TSS	Fetal Intestine Large	intestine
46	chr11:57528800-57532200	Active TSS	Ovary	ovary
47	chr11:57528800-57532200	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr11:57528800-57532200	Active TSS	NHLF	lung
49	chr11:57528800-57532400	Active TSS	Brain Germinal Matrix	brain
50	chr11:57528800-57532400	Active TSS	Fetal Muscle Trunk	muscle

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