Variant report

Variant	rs11571967
Chromosome Location	chr6:44376584-44376585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44354112..44357665-chr6:44373083..44377186,4	K562	blood:
2	chr6:44354220..44357665-chr6:44374587..44377686,4	K562	blood:
3	chr6:44368851..44370605-chr6:44376077..44377814,2	K562	blood:

Variant related genes	Relation type
ENSG00000096401	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11571890	0.88[AFR][1000 genomes]
rs11571892	0.88[AFR][1000 genomes]
rs11571899	0.88[AFR][1000 genomes]
rs11571902	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571952	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571959	0.88[AFR][1000 genomes]
rs11571965	0.88[AFR][1000 genomes]
rs11571966	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571981	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11571986	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572001	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572004	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572013	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572017	1.00[AFR][1000 genomes]
rs11572023	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572033	1.00[AFR][1000 genomes]
rs11572036	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572044	1.00[AFR][1000 genomes]
rs11572049	0.87[AFR][1000 genomes]
rs11572050	0.87[AFR][1000 genomes]
rs11572061	0.85[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44357600-44377600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44357600-44383200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:44357600-44388200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:44357800-44378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:44358000-44384800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:44358000-44385600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:44358000-44385600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:44358000-44385800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:44358000-44386000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:44358200-44378000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:44358200-44381800	Strong transcription	Fetal Thymus	thymus
13	chr6:44358200-44385600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:44358400-44378400	Strong transcription	K562	blood
15	chr6:44358400-44385200	Strong transcription	Dnd41	blood
16	chr6:44358400-44386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:44358600-44378600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:44358600-44381800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:44358800-44385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:44359200-44382000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:44359400-44386000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:44360200-44381200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:44366000-44383200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:44367800-44382000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr6:44368000-44385000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:44368200-44378600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:44368200-44382000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:44368400-44378400	Strong transcription	HSMM	muscle
30	chr6:44368400-44381600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr6:44368400-44383000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:44368400-44386000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:44369400-44385600	Strong transcription	Liver	Liver
34	chr6:44370200-44377400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:44370600-44382600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:44370800-44381800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:44371200-44382600	Strong transcription	Primary T cells from cord blood	blood
38	chr6:44371400-44377000	Strong transcription	NHEK	skin
39	chr6:44371400-44377000	Strong transcription	Osteobl	bone
40	chr6:44371400-44378000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:44371400-44378400	Strong transcription	Adipose Nuclei	Adipose
42	chr6:44371400-44378400	Strong transcription	HUVEC	blood vessel
43	chr6:44371400-44378600	Strong transcription	Placenta	Placenta
44	chr6:44371400-44381600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:44371400-44381600	Strong transcription	NH-A	brain
46	chr6:44371400-44382200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:44371400-44382200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:44371400-44382800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr6:44371400-44385600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:44371400-44385600	Strong transcription	Fetal Muscle Trunk	muscle

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