Variant report

Variant	rs11571986
Chromosome Location	chr6:44387816-44387817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44382268..44386801-chr6:44387364..44390498,4	MCF-7	breast:
2	chr6:44387232..44389973-chr6:44398026..44400145,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11571890	0.88[AFR][1000 genomes]
rs11571892	0.88[AFR][1000 genomes]
rs11571899	0.88[AFR][1000 genomes]
rs11571902	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571952	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571959	0.88[AFR][1000 genomes]
rs11571965	0.88[AFR][1000 genomes]
rs11571966	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11571967	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11571981	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572001	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572004	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572013	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572017	1.00[AFR][1000 genomes]
rs11572023	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572033	1.00[AFR][1000 genomes]
rs11572036	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572044	1.00[AFR][1000 genomes]
rs11572049	0.87[AFR][1000 genomes]
rs11572050	0.87[AFR][1000 genomes]
rs11572061	0.85[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv885858	chr6:44385441-44421240	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv885859	chr6:44385441-44422466	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv517370	chr6:44385441-44422689	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44357600-44388200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:44374600-44388400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:44376800-44398200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:44384200-44397600	Weak transcription	Small Intestine	intestine
8	chr6:44384600-44396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:44385000-44389600	Weak transcription	Stomach Mucosa	stomach
10	chr6:44385000-44392800	Weak transcription	Right Ventricle	heart
11	chr6:44385000-44397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:44385200-44388200	Weak transcription	Psoas Muscle	Psoas
13	chr6:44385200-44403200	Weak transcription	Gastric	stomach
14	chr6:44385400-44390000	Weak transcription	Fetal Kidney	kidney
15	chr6:44385400-44392600	Weak transcription	Fetal Brain Male	brain
16	chr6:44385600-44388400	Weak transcription	A549	lung
17	chr6:44385600-44389600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:44385600-44392200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:44386600-44395400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:44386600-44409200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:44386800-44388800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:44386800-44394000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:44386800-44395600	Strong transcription	Hela-S3	cervix
24	chr6:44386800-44395800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:44386800-44397800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:44386800-44398800	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:44386800-44402600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:44386800-44402600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:44386800-44402800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:44386800-44404200	Strong transcription	Fetal Thymus	thymus
31	chr6:44386800-44405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:44386800-44406400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:44386800-44408800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:44387000-44388000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:44387000-44388000	Strong transcription	HMEC	breast
36	chr6:44387000-44388400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:44387000-44388400	Strong transcription	Colonic Mucosa	Colon
38	chr6:44387000-44388600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:44387000-44388800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:44387000-44388800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:44387000-44388800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr6:44387000-44388800	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:44387000-44389000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:44387000-44389000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:44387000-44389000	Strong transcription	Brain Substantia Nigra	brain
46	chr6:44387000-44389400	Strong transcription	Brain Anterior Caudate	brain
47	chr6:44387000-44389600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:44387000-44389600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:44387000-44389600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:44387000-44389600	Strong transcription	Liver	Liver

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