Variant report

Variant	rs11572084
Chromosome Location	chr10:96826843-96826844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11572122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45527932	1.00[AMR][1000 genomes]
rs45578338	1.00[AMR][1000 genomes]
rs57281479	1.00[AMR][1000 genomes]
rs57627758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57773126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59393664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59963179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61760179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900194	1.00[AMR][1000 genomes]
rs9332094	1.00[AMR][1000 genomes]
rs9332109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332124	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332126	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332200	1.00[AFR][1000 genomes]
rs9332207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332233	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332240	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96824000-96832000	Weak transcription	Pancreas	Pancrea
2	chr10:96824200-96828000	Transcr. at gene 5' and 3'	Liver	Liver
3	chr10:96826800-96827200	Active TSS	Brain Substantia Nigra	brain

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