Variant report

Variant	rs7900194
Chromosome Location	chr10:96702066-96702067
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:96702009-96702104	GM20000	blood:	n/a	n/a

Variant related genes	Relation type
MTND4P20	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11572084	1.00[AMR][1000 genomes]
rs11572122	1.00[AMR][1000 genomes]
rs17879685	1.00[AMR][1000 genomes]
rs17882646	1.00[AMR][1000 genomes]
rs17883850	1.00[AMR][1000 genomes]
rs1923375	1.00[AMR][1000 genomes]
rs56717990	1.00[AMR][1000 genomes]
rs56803012	1.00[AMR][1000 genomes]
rs57565992	1.00[AMR][1000 genomes]
rs57627758	1.00[AMR][1000 genomes]
rs57773126	1.00[AMR][1000 genomes]
rs58398690	1.00[AMR][1000 genomes]
rs58573303	1.00[AMR][1000 genomes]
rs59210943	1.00[AMR][1000 genomes]
rs59393664	1.00[AMR][1000 genomes]
rs59729409	1.00[AMR][1000 genomes]
rs59963179	1.00[AMR][1000 genomes]
rs60223717	1.00[AMR][1000 genomes]
rs61460642	1.00[AMR][1000 genomes]
rs61760179	1.00[AMR][1000 genomes]
rs9332094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332109	1.00[AMR][1000 genomes]
rs9332124	1.00[AMR][1000 genomes]
rs9332126	1.00[AMR][1000 genomes]
rs9332148	1.00[AMR][1000 genomes]
rs9332193	1.00[AMR][1000 genomes]
rs9332207	1.00[AMR][1000 genomes]
rs9332233	1.00[AMR][1000 genomes]
rs9332240	1.00[AMR][1000 genomes]
rs9332243	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3336672	chr10:96543010-96711519	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1037973	chr10:96563228-96711744	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1047782	chr10:96581094-96718479	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv551962	chr10:96680265-96734339	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96699200-96702800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:96700800-96702600	Transcr. at gene 5' and 3'	Liver	Liver
3	chr10:96701200-96702400	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr10:96702000-96702600	ZNF genes & repeats	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links