Variant report

Variant	rs11572099
Chromosome Location	chr10:96824024-96824025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11572149	1.00[AFR][1000 genomes]
rs11572153	1.00[AFR][1000 genomes]
rs11572171	0.88[AFR][1000 genomes]
rs56261680	0.82[AFR][1000 genomes]
rs60207889	0.82[AFR][1000 genomes]
rs61587934	1.00[AFR][1000 genomes]
rs7089813	0.82[AFR][1000 genomes]
rs74150729	0.82[AFR][1000 genomes]
rs74150730	0.82[AFR][1000 genomes]
rs74150759	1.00[AFR][1000 genomes]
rs74150760	1.00[AFR][1000 genomes]
rs9332142	0.82[AFR][1000 genomes]
rs9332153	0.82[AFR][1000 genomes]
rs9332165	0.82[AFR][1000 genomes]
rs9332176	0.82[AFR][1000 genomes]
rs9332241	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96823600-96824200	Genic enhancers	Liver	Liver
2	chr10:96823600-96824600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:96824000-96824400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:96824000-96832000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links