Variant report

Variant	rs56261680
Chromosome Location	chr10:96752489-96752490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11572099	0.82[AFR][1000 genomes]
rs11572149	0.82[AFR][1000 genomes]
rs11572153	0.82[AFR][1000 genomes]
rs11572171	0.94[AFR][1000 genomes]
rs56220357	0.94[AFR][1000 genomes]
rs60207889	1.00[AFR][1000 genomes]
rs61587934	0.82[AFR][1000 genomes]
rs7072260	0.88[AFR][1000 genomes]
rs7089813	1.00[AFR][1000 genomes]
rs74150729	1.00[AFR][1000 genomes]
rs74150730	1.00[AFR][1000 genomes]
rs74150759	0.82[AFR][1000 genomes]
rs74150760	0.82[AFR][1000 genomes]
rs7917731	0.82[AFR][1000 genomes]
rs7917838	0.82[AFR][1000 genomes]
rs9332142	1.00[AFR][1000 genomes]
rs9332153	1.00[AFR][1000 genomes]
rs9332165	1.00[AFR][1000 genomes]
rs9332176	1.00[AFR][1000 genomes]
rs9332241	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96752200-96757400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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