Variant report

Variant	rs11572401
Chromosome Location	chr1:217235349-217235350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1025647	1.00[CHB][hapmap]
rs1025649	1.00[CHB][hapmap]
rs11572466	1.00[CHB][hapmap]
rs1339218	1.00[CHB][hapmap]
rs1416536	1.00[CHB][hapmap]
rs1561188	1.00[CHB][hapmap]
rs17044289	1.00[CHB][hapmap]
rs17607502	1.00[CHB][hapmap]
rs1890556	1.00[CHB][hapmap]
rs2247426	1.00[CHB][hapmap]
rs2576204	1.00[CHB][hapmap]
rs2576213	1.00[CHB][hapmap]
rs2789559	1.00[CHB][hapmap]
rs2818766	1.00[CHB][hapmap]
rs2818767	1.00[CHB][hapmap]
rs2818770	1.00[CHB][hapmap]
rs9441614	1.00[CHB][hapmap]
rs946437	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:217221800-217251400	Weak transcription	Left Ventricle	heart
3	chr1:217223200-217250000	Weak transcription	Psoas Muscle	Psoas
4	chr1:217234400-217237200	Enhancers	Fetal Heart	heart
5	chr1:217234600-217237200	Enhancers	Fetal Muscle Leg	muscle
6	chr1:217235000-217236000	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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