Variant report

Variant	rs17607502
Chromosome Location	chr1:217125609-217125610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1025647	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1025649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10863283	0.90[YRI][hapmap];0.86[AMR][1000 genomes]
rs11117730	0.90[YRI][hapmap];0.86[AMR][1000 genomes]
rs11572401	1.00[CHB][hapmap]
rs11572466	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11572486	0.80[YRI][hapmap];0.81[AMR][1000 genomes]
rs11572587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1339218	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1416536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1579635	1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs17044289	1.00[CHB][hapmap]
rs1816566	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185223	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185224	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2576204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2576213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789575	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818771	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818787	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741502	1.00[ASN][1000 genomes]
rs72743309	1.00[ASN][1000 genomes]
rs72743311	1.00[ASN][1000 genomes]
rs7417600	0.84[AMR][1000 genomes]
rs9441614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217119800-217126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:217120400-217126200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea
4	chr1:217125200-217135400	Weak transcription	Fetal Heart	heart
5	chr1:217125400-217125800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:217125400-217125800	Enhancers	Left Ventricle	heart
7	chr1:217125400-217126600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:217125400-217127000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:217125600-217126000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:217125600-217126000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:217125600-217127000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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