Variant report

Variant	rs11572587
Chromosome Location	chr1:216986009-216986010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1025647	1.00[CHB][hapmap]
rs1025649	1.00[CHB][hapmap]
rs11572466	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1339218	1.00[CHB][hapmap]
rs1416536	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1561188	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17044289	1.00[CHB][hapmap]
rs17607502	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1816566	1.00[ASN][1000 genomes]
rs1890556	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2247426	1.00[CHB][hapmap]
rs2576204	1.00[CHB][hapmap]
rs2576213	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2789559	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2789575	1.00[ASN][1000 genomes]
rs2818766	1.00[CHB][hapmap]
rs2818767	1.00[CHB][hapmap]
rs2818770	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2818771	1.00[ASN][1000 genomes]
rs2818787	1.00[ASN][1000 genomes]
rs9441614	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs946437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216979000-216986200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:216979800-216988800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:216979800-216989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:216980200-216986400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:216980200-216987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:216980400-216988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:216983200-216988600	Weak transcription	Right Atrium	heart
8	chr1:216983200-216989200	Weak transcription	Gastric	stomach
9	chr1:216983600-216986200	Weak transcription	Psoas Muscle	Psoas
10	chr1:216983600-216986400	Weak transcription	Fetal Lung	lung
11	chr1:216983600-216988600	Weak transcription	Left Ventricle	heart
12	chr1:216983600-216988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:216985000-216986400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:216985000-216987600	Weak transcription	Fetal Kidney	kidney
15	chr1:216985000-216988600	Enhancers	Fetal Heart	heart
16	chr1:216985200-216988400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:216985400-216986200	Weak transcription	Brain Substantia Nigra	brain
18	chr1:216985400-216988200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:216985400-216988400	Weak transcription	Fetal Intestine Small	intestine
20	chr1:216985400-216989000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:216985600-216988400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:216985800-216989000	Weak transcription	Fetal Intestine Large	intestine
23	chr1:216986000-216986400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:216986000-216986400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:216986000-216987800	Enhancers	HSMMtube	muscle

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