Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11572427	0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs11572435	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11577589	0.93[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs11585218	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11585774	0.93[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs12723476	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs12724974	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs12731437	0.86[CHB][hapmap]
rs12738035	0.80[CHB][hapmap]
rs12741457	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs12747869	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs12750129	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs12756498	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs12759584	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs17044977	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs17635718	0.80[CHB][hapmap]
rs17636663	0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17686743	0.80[CHB][hapmap]
rs17686866	0.86[CHB][hapmap]
rs1890555	0.81[ASN][1000 genomes]
rs34493634	0.99[ASN][1000 genomes]
rs34904258	0.99[ASN][1000 genomes]
rs35185630	0.96[ASN][1000 genomes]
rs35409092	0.96[ASN][1000 genomes]
rs35701761	0.92[ASN][1000 genomes]
rs4846800	0.86[CHB][hapmap]
rs71643439	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217204800-217226000	Weak transcription	Fetal Kidney	kidney
2	chr1:217212000-217223200	Weak transcription	Gastric	stomach
3	chr1:217212600-217224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:217215400-217226600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:217216600-217225000	Weak transcription	Right Ventricle	heart
7	chr1:217217000-217226600	Weak transcription	Brain Anterior Caudate	brain
8	chr1:217218000-217227000	Weak transcription	Fetal Heart	heart
9	chr1:217218200-217224000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:217220000-217224000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:217221800-217223400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:217221800-217251400	Weak transcription	Left Ventricle	heart
13	chr1:217223000-217223200	Enhancers	Pancreas	Pancrea
14	chr1:217223000-217223200	Enhancers	Psoas Muscle	Psoas
15	chr1:217223000-217223600	Genic enhancers	Fetal Muscle Leg	muscle

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